Staphylococcus simiae: SAMEA4384339_0429
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Entry
SAMEA4384339_0429 CDS
T06955
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ssim
Staphylococcus simiae
Pathway
ssim03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAMEA4384339_0429 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssim03400
]
SAMEA4384339_0429 (mfd)
Enzymes [BR:
ssim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAMEA4384339_0429 (mfd)
DNA repair and recombination proteins [BR:
ssim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SAMEA4384339_0429 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
Glyco_hydro_115
UB2H
IstB_IS21
DUF1421
Motif
Other DBs
NCBI-ProteinID:
SNV61522
LinkDB
All DBs
Position
1:491509..495015
Genome browser
AA seq
1168 aa
AA seq
DB search
MSILTHFITEDKRFQELSQVFGQEHNLVTGLSPSAKATIIAEKYLNSDRQLLLITNNLYQ
ADKIEADILQYVHSDEVYKYPVQDIMTEEFSTQSPQLMSERVRTLTALAQNKKGLFIVPL
NGFKKWLTPVDMWKNHQMTVRVGEDINVDEFLNKLVNMGYRRESVVSHIGEFSLRGGIID
IFPLIGQPVRIELFDTEVDSIRDFDVETQRSNDNLEQVEITTASDYIITENVINTLKNNL
QEAYETTRPKIDKSVRNDLKETYESFKLFESSYFDHQVLRRLVAFMYNQPSTIIDYFQDN
AIIAVDEFNRIKETEESLTIESEDFISNLIESGNGFIGQSFIKYEGFERLLEHYPVTYFT
LFTATMPVKLEHIIKFSCKPVQQFYGQYDIMRSEFQRYVHNNYNIVVLVETETKVERMQA
MLNEMHIPTVTNMHHATASGQAIIMEGSLSEGFELPYMQLVVITERELFKTKQQKKKKRT
KTLSNAEKIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKLQYKGTDQLFVP
VDQMDQVQKYVASEDKTPKLNKLGGTEWKKTKAKVQQSVEDIAEELIELYKEREMAEGYQ
FGEDTTEQTTFELDFPYELTPDQAKSIDEIKMDMQKSRPMDRLLCGDVGYGKTEVAVRAA
FKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVEIQLMSRFRSAKEIKQTKEGIKTG
FVDIVVGTHKLLSKDIEYKDLGLLIVDEEQRFGVRHKERIKTMKNNVDVLTLTATPIPRT
LHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSI
YEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANT
LIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSG
FKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKETQPDAPEVEVD
LNLDAYLPTEYITNEQAKIEIYKKLRQIETEEQLLDIKDELIDRFNDYPIEVERLLDIVE
IKIHALHAGITLIKDKGKTIEISLSVKGTEELDGEALFKATQPLGRTMKVGVQDNAMKVT
LTKKQQWLDNLKFLVKSIAESMRIKDEE
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgtctatattaactcatttcataacagaagataaacgttttcaagaacttagtcaggta
tttggtcaagaacacaatttagtcactggtttatccccatctgcaaaagctactattatt
gcagaaaagtatttgaattccgatagacaattattattaataactaataatttatatcaa
gcagataaaatagaagctgatattttacaatatgttcacagcgatgaagtatataaatat
ccagtacaagatattatgacagaagaattttcaacccaaagccctcaattgatgagcgaa
cgtgtcagaacattaacggcgttagcgcaaaataaaaaagggttatttatcgttccattg
aatggatttaaaaagtggttgacgcctgttgatatgtggaagaatcatcaaatgactgtt
cgtgttggtgaagatatcaatgttgatgaatttttaaataaattagttaatatgggatat
agacgagaaagtgtcgtatcgcatattggtgaattttcattacgtggtggaattattgat
atcttcccgttaattgggcaaccagttagaattgaactttttgatacagaagttgattct
ataagagatttcgatgtagaaacacaaagatcgaacgataatcttgaacaagtcgagatt
actacagctagtgattatattattactgaaaatgtcatcaatactttgaagaataatcta
caagaagcttatgaaactacaagacctaaaattgataagtctgtacgcaatgatttaaaa
gaaacatatgaaagttttaaattgttcgaaagctcgtattttgatcatcaggttttacga
cgacttgttgcatttatgtataaccagccatctacaatcattgattatttccaagataac
gcgattattgctgttgatgaatttaatcgtattaaagaaaccgaagaaagtttaacaata
gaatcagaagatttcattagtaatttaatagaaagtggtaatggtttcattggacaaagt
tttattaagtatgaaggatttgaacgtttattagaacattatccagtaacctatttcaca
ttatttactgctacaatgcctgttaagctagaacatattattaaattttcatgtaaacct
gttcaacaattttacggtcaatacgatattatgcgttcagaatttcaaagatatgttcat
aataactataatattgtagtcttagttgaaacagaaactaaagttgagcgtatgcaagca
atgttaaatgaaatgcacataccaactgtgactaatatgcatcacgcaactgcttcagga
caagctattattatggaaggaagtttgtctgaaggatttgaactgccgtatatgcaatta
gttgttattacagaacgtgaattatttaaaacgaagcaacagaaaaagaaaaaaagaacc
aaaacattatcgaatgctgaaaagataaagtcatatcaagatttgaatgttggtgattat
attgttcacgtacatcatggtgtaggtcgctatctaggcgtagaaacgttagaagtagga
gatacacatagagattacatcaaacttcaatataaaggcactgatcaactatttgttcca
gtagatcaaatggatcaagttcaaaagtatgtcgcatcagaagacaaaacacctaagtta
aataaattaggtggaacagaatggaaaaaaacaaaagccaaagtacaacaaagtgttgaa
gatattgctgaagagcttattgaactatataaagaaagagaaatggctgaaggatatcaa
tttggtgaggatacaacagaacaaacaacatttgagttggatttcccatacgaactaact
ccagaccaagctaaatctattgatgaaataaaaatggatatgcaaaaatcaagaccaatg
gaccgtttattatgtggtgatgttggttatggtaaaacagaagtagctgttcgagcagca
tttaaagctgtgatggaaggaaaacaagtagcatttctagtacctacaacgattttagcg
caacagcattatgaaacattgatcgaacgtatgcaagattttccggttgaaattcaatta
atgagccgctttagaagtgcaaaagaaattaaacaaacgaaagagggcattaagactgga
tttgtggatattgtagttggtacacataaattattaagtaaagatattgagtataaagat
ttagggttattgatcgtcgatgaagaacagcgttttggagttagacataaagaaagaatc
aaaacaatgaaaaacaatgttgatgtcttaacactaacagcaacgccgataccacgaaca
ctacatatgagtatgttaggagttagagatttatcagttatagaaacaccaccagaaaat
agattcccagtacaaacttatgtacttgaacaaaatacgaattttattaaagaagcttta
gaacgtgaattatcacgagatggacaagtattttacttatataataaagtgcaatcaata
tatgagaaacgcgaacaattacaaatgctcatgccagatgccaatattgcagttgcacat
ggtcaaatgactgagcgagacttagaagaaacgatgctaagttttatcaatcacgaatat
gatattttagtgacgacaacgattattgagacaggcgttgatgttccaaatgccaatact
ttaattattgaagatgctgatcgttttgggttaagtcagttatatcaattaagaggacgt
gtaggtcgctcaagtcgtataggatatgcctatttcttacatccagcaaataaagttctt
actgaaactgctgaagatcgtttgcaagctatcaaagaatttactgaactcggttccggt
tttaaaattgctatgagagatttaaatattcgtggcgctggtaatctgttaggtaaacaa
caacatggctttatcgatacagttggttttgacttatatagtcaaatgttagaagaagca
gtaaatgaaaaacgtggcattaaagaaactcaaccagatgcaccagaagttgaagttgat
ttgaatttagatgcgtatttacctactgaatatattacaaatgaacaagctaaaattgaa
atttataaaaaattacgtcaaatagaaacagaagaacaattactagatatcaaagatgaa
ttaatagatcgctttaatgattatccaatagaagtagaacgcctgctagatattgttgaa
attaaaattcatgcacttcatgcaggaatcactttaataaaagataaaggcaaaacaatc
gaaatttcattatctgttaaaggtactgaagaattagatggtgaagcgttatttaaagct
acgcaaccacttggaagaacgatgaaagtgggggttcaagataatgcaatgaaagtgaca
ttgactaagaaacaacaatggctagacaatttgaagttccttgttaaatctatagctgaa
agtatgagaattaaggatgaagaataa
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integrated database retrieval system
