Staphylococcus simiae: SAMEA4384339_0488
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Entry
SAMEA4384339_0488 CDS
T06955
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ssim
Staphylococcus simiae
Pathway
ssim03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssim00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAMEA4384339_0488 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssim03021
]
SAMEA4384339_0488 (rpoC)
03400 DNA repair and recombination proteins [BR:
ssim03400
]
SAMEA4384339_0488 (rpoC)
Enzymes [BR:
ssim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAMEA4384339_0488 (rpoC)
Transcription machinery [BR:
ssim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAMEA4384339_0488 (rpoC)
DNA repair and recombination proteins [BR:
ssim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAMEA4384339_0488 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
SNV62000
LinkDB
All DBs
Position
1:550353..553979
Genome browser
AA seq
1208 aa
AA seq
DB search
MIDVNNFHYMKIGLASPEKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
SCGKYKRVRYKGMVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEEVIYFASYVVVDPGPTGLEKKTLLSEAEFRDYYDKYPGQFVAKMGAEGIKDLLE
EIDLDEELKQLRDELESATGQRLTRAIKRLEVVESFRNSGNNPAWMILDVLPIIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPSLKMYQCGLPKE
MALELFKPFVMKELVQREIATNIKNAKSKIERMDDEVWDVLEDVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVTTAYNADFDGDQMAVHVPLSKEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKDAVNTGAIFNDTNEVLKAYANGFVHLHTRIGVH
ASSFNNPTFTDEQNKKILVTSVGKIIFNEIIPDSFAYINEPTQENLERKTPDRYFIDPTT
LGEGGLKAYFENEELIEPFNKKFLGNIIAEVFNRFSITDTSMMLDRMKDLGFKFSSKAGI
TVGVADIVVLPDKQQILDEHEKLVDRITKQFNRGLITEEERYNAVVEIWTDAKDQIQGEL
MQSLEKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKIIELPITSSFREGLTVLEY
FISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSDIKEGTEMI
EPFIERIEGRYSKETIRHPQTDEIIIRPDELITPEIAKKITDAGIEQMYIRSAFTCNARH
GVCEKCYGKNLATGEKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRI
QEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASGTSRLKVEIGQ
PVQRGEVLTEGSIEPKNYLAVAGLNATESYLLKEVQKVYRMQGVEIDDKHVEVMVRQMLR
KVRIIEAGDTKLLPGSLVDIHNFTDANREAFKHRKRPATAKPVLLGITKASLETESFLSA
ASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRYSDVKYEKTAAPIAEVE
AQEEIIEQ
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtaaataatttccattatatgaaaattgggttagcttcacctgaaaaaatc
cgttcttggtcatttggtgaagttaaaaaacctgaaacaatcaactaccgtacattaaaa
cctgaaaaagatggtctattctgcgaaagaatttttggacctacaaaagactgggaatgt
agttgtggtaaatacaaacgtgttcgctacaaaggcatggtctgtgatagatgtggtgta
gaagtaacaaaatctaaagtacgtcgtgaaagaatgggacacattgaactagctgctcct
gtttcacatatttggtattttaaaggaattccaagtcgtatgggattattacttgatatg
tcacctagagcattagaagaagtcatttactttgcttcttatgttgtagtagatccaggt
ccaactggtctagaaaagaaaacattattatctgaagctgaattcagagattactatgat
aaatacccaggtcaattcgttgctaaaatgggtgctgaaggtattaaagatctacttgaa
gaaattgatttagatgaagaacttaaacaattacgtgatgagttagagtcagcaactgga
caaagacttactcgtgcaattaaacgtttagaagttgttgaatcattccgtaactcaggt
aataatcctgcatggatgatattagatgttcttcctatcattccaccagaaattcgtcca
atggttcaattagatggtggacgttttgcaacaagtgatttaaatgatttatatcgtcgt
gttatcaatcgtaataatcgtttaaaacgtttattagatttaggtgcacctggtattatt
gtgcaaaacgaaaaacgtatgttacaagaagctgtcgatgcattgattgacaatggtcgt
cgtggtcgtccagtaactggaccaggtaaccgcccattaaaatctttatcacacatgctt
aaaggtaaacaaggtcgtttccgtcaaaacttacttggtaaacgtgttgactattctggt
cgttcagtaattgcagttggaccaagtcttaaaatgtaccaatgtggtcttccaaaagaa
atggcattagaattgttcaaaccttttgttatgaaagaattagtacaacgtgagattgct
actaacatcaaaaatgctaagagtaaaatcgagcgtatggatgatgaagtttgggatgta
ttagaagatgttattagagaacatccagtattacttaaccgtgcaccaacattgcataga
ttaggtattcaagcatttgaaccaacattagtagaaggtagagctattcgtttacatcca
cttgtaacgactgcgtataatgccgattttgatggtgaccaaatggctgttcacgtacct
ttatctaaagaagcacaagctgaagcaagaatgttaatgttagctgctcaaaatatctta
aaccctaaagatggtaaaccagttgtaacaccatctcaagatatggtattaggtaactat
tatttaacattagaaagaaaagatgcagtgaatacaggtgcaatctttaatgacacaaat
gaagtgttaaaagcttatgcaaacggatttgtacatttacacactcgtattggtgtacac
gcaagttcatttaataatccaacatttactgatgaacaaaataaaaaaattcttgtaact
tctgtaggtaaaattattttcaatgaaatcattccggattcatttgcgtatattaacgag
cctacacaagagaatctagaacgtaaaactccagatagatacttcattgatccgacaaca
ttaggtgaaggtggcttaaaagcttactttgaaaatgaagaattaatagaaccattcaac
aaaaaattcttaggaaacatcattgcagaagtgtttaatagattcagtattactgataca
tctatgatgcttgatagaatgaaagatctaggatttaaattctcatctaaagctggtatc
acagttggtgtcgctgatatcgtggtattaccagataaacaacaaattttagatgaacat
gaaaaattagttgatagaattactaaacaatttaaccgtggtttaatcactgaagaagaa
agatataatgcagttgttgaaatttggacagatgcaaaagatcaaattcaaggtgaatta
atgcaatcacttgaaaaaacaaacccaatctttatgatgagtgattcaggtgcccgtggt
aacgcatctaactttacacaattagctggtatgcgtggtttaatggctgcaccatctggt
aagattattgaattaccaatcacttcatcattccgtgaaggtttaacagtacttgagtac
ttcatctcaacacacggtgctcgtaaaggtcttgctgatacagcccttaaaacagctgac
tcaggttaccttactcgtcgtcttgttgacgttgctcaagatgttatcgttcgtgaagaa
gattgtggtacggacagaggtttattagtttctgatattaaagaaggtacagaaatgatt
gaaccatttattgaacgtatcgaaggacgttattcaaaagaaacaattcgtcatccacaa
acagacgaaattattattcgtcctgatgaattaataacacctgaaattgctaagaaaatt
actgatgcaggtattgaacaaatgtatatccgctcagcatttacttgtaatgctagacac
ggtgtttgtgaaaaatgttatggtaaaaaccttgctactggtgaaaaagttgaagttggt
gaagcagttggtacaattgctgcccaatcaattggtgaaccaggtacacagcttactatg
cgtacattccatacaggtggggtagctggtagtgatattacacaaggtcttccacgtatt
caagaaattttcgaagcacgtaatccaaaaggtcaagcggtgattactgaaatcgaaggt
gttgttgaagacattaaattagctaaagatagacaacaagaaatagttgttaaaggtgca
aacgaaactagatcttatctagcttctggtacttcaagacttaaagtagaaattggtcaa
ccagtacaacgtggtgaagtattaacagaaggttctattgagcctaagaactacttagca
gttgctggtttaaatgctactgaaagttacttattaaaagaagtacaaaaagtttaccgt
atgcaaggtgttgaaatcgatgataaacacgttgaagtaatggtaagacaaatgttacgt
aaagttcgtatcattgaagctggtgatactaaattattaccaggttcattagttgatatc
cataacttcacagatgctaatagagaagcatttaaacatcgtaaacgcccagcaacagct
aaaccagtgttactaggtattacgaaagcatcacttgaaacagaaagtttcttatctgca
gcatcattccaagaaactacaagagttcttacagatgcagctattaaaggtaaacgtgat
gatttattaggtcttaaagaaaatgtaattatcggtaaattgattccagctggtactggt
atgagacgttatagtgacgttaaatatgaaaaaacagctgcacctattgctgaagtagag
gcacaagaagaaattatcgaacaataa
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integrated database retrieval system
