Staphylococcus simiae: SAMEA4384339_1376
Help
Entry
SAMEA4384339_1376 CDS
T06955
Symbol
recQ_2
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ssim
Staphylococcus simiae
Pathway
ssim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMEA4384339_1376 (recQ_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssim03019
]
SAMEA4384339_1376 (recQ_2)
03400 DNA repair and recombination proteins [BR:
ssim03400
]
SAMEA4384339_1376 (recQ_2)
Enzymes [BR:
ssim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAMEA4384339_1376 (recQ_2)
Messenger RNA biogenesis [BR:
ssim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SAMEA4384339_1376 (recQ_2)
DNA repair and recombination proteins [BR:
ssim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SAMEA4384339_1376 (recQ_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
SNV72197
LinkDB
All DBs
Position
1:complement(1490681..1492060)
Genome browser
AA seq
459 aa
AA seq
DB search
MLHKFLQQKFGFDDFKPGQEAVIDSVLSGQHTLGILPTGSGKSLCYQLPTYINEKPTLII
SPLISLMDDQVMHLKLNGEKQVACIHSGLDEVEKRHNIKMLQHSRFIFLSPEFILQPFNF
KLIAAIDFGLIVLDEAHCLSEWGYDFRPHYALIGKVTKHFHKATILALTATAPSHLRDDL
KNMLAVDFQVIKTTMNRPNITFSHLNFNDDSDKTDWLLSFLEYSGPTIVYVSSKKLCHQL
AQQIYNHGYLTGIYHGDMNYQERQTVQQQFLNNDIPVIVATSAFGMGVNKKDIRTIIHFH
LSSSPSNYLQEIGRAGRDGQPSQAISLYQPDDSFILETLLFSDMITDEDIHQFSVGQLLS
QEKQNILTTLASYYSINDLTLIFNQSFKRKQLGFYRMLGYINLDQCRRRYLLEFFKEVPP
KQQQCCDIDDDIDRINIKNKKEVVRKLDVKEKLQNLFQS
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
gtgcttcataaatttttacaacaaaaatttggatttgatgattttaaacccggacaggaa
gcagttattgacagtgtgctatctggtcaacatacattaggtatattacctactggaagt
ggtaaaagtttatgttatcaattaccaacatatattaatgaaaaaccaacgcttatcatt
tcgccattaatttcgttaatggatgatcaagtgatgcatttgaaattaaatggtgaaaaa
caagttgcatgcatacactcaggtttggatgaagtcgaaaaacgtcataatattaaaatg
ttacagcatagtcgctttatatttttaagtcctgaatttatattgcaaccattcaatttt
aaacttattgctgctattgattttgggctcattgtgctagatgaagcacattgcctctct
gaatggggttatgattttagaccgcattatgcacttattggaaaagtaacaaagcatttt
cacaaggcaacaatattagcattaacagcaacagcgccatcacatttacgtgatgatttg
aaaaatatgttagcagtagacttccaggttatcaaaacgacgatgaatagacccaatatt
acttttagtcatcttaattttaatgatgatagcgataaaactgattggttactatctttt
ttagaatattcaggcccaacaatcgtctacgtctcctctaaaaaattatgtcatcaactt
gcacaacaaatttataatcatggatatttaacaggtatataccatggtgatatgaattat
caagaacgacaaacagttcaacaacaatttttaaataatgatattccagtgattgtagcg
acaagtgcatttggtatgggggttaataaaaaagacattagaacaattattcattttcat
ttgtcatccagtccgtcgaactatttacaagaaattggtagagcaggcagagatggtcaa
cctagtcaggcaattagtttatatcaaccagatgatagttttatactggaaactttatta
tttagcgatatgatcactgatgaagatatacatcaattttcagtaggccaactattatca
caagaaaaacagaacatattaactacacttgcatcttattatagtattaatgacttaacg
ctcatttttaatcaatcatttaaaaggaagcaattaggattttataggatgttggggtat
atcaacttagatcagtgccgacgtcgttatttattggaattttttaaggaggtgcctcct
aaacagcaacaatgctgtgatatagatgatgacattgatagaattaatattaaaaataaa
aaagaagtagtaagaaaactggatgttaaagaaaaattacaaaatttgttccaaagttag
DBGET
integrated database retrieval system
