Staphylococcus simiae: SAMEA4384339_1523
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Entry
SAMEA4384339_1523 CDS
T06955
Symbol
recJ
Name
(GenBank) putative single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ssim
Staphylococcus simiae
Pathway
ssim03410
Base excision repair
ssim03430
Mismatch repair
ssim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SAMEA4384339_1523 (recJ)
03430 Mismatch repair
SAMEA4384339_1523 (recJ)
03440 Homologous recombination
SAMEA4384339_1523 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssim03400
]
SAMEA4384339_1523 (recJ)
DNA repair and recombination proteins [BR:
ssim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SAMEA4384339_1523 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SAMEA4384339_1523 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SAMEA4384339_1523 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
SAS4
Motif
Other DBs
NCBI-ProteinID:
SNV73851
LinkDB
All DBs
Position
1:complement(1634380..1636653)
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AA seq
757 aa
AA seq
DB search
MIKSKYKWHLQQPTEYISGQVMAKFKLTPIVKKILESKSLVEENQIDAIINDGVIDYDPF
KLSDMSKAVERINTAIDNKEKILVYGDYDADGVTSTTILVTTLQRLGAQVGWYIPNRFSE
GYGPNELAFKNAHDEGISLIITVDNGIQGHNEIDMVQKLGVDVIVTDHHEIGNTLPLAYA
IVHPMHPNFEYPFQQLCGAGVAYKLAQALLGDVPHYFKALVAIGTIADLVSLTDENRSLV
KQGLAQLNDDCPVAIKALLNEAGYNDEINEETIGFIIGPRLNAVGRLEDASLACELLMTE
DEEEAVFLAEQVEHFNRERKDIVAAITEEAMAMAETQVNDGNLFLLLAKENWHEGVLGIV
ASKIVETYALPTLILNIDREQNHAKGSARSIAQVSMFEILNAHHDLIAKFGGHHMAAGMT
MNIDNIDELSTGLNQWMTTLQQTTSLDPVKKVDVMLNEQDITIKNIKDINKLRPFGTDFN
KPLFELNDLTVGSVKAIGQDNKHLKLALGDNKITALYWQHGHLASELQDQQPINVLANIQ
INDWNGNQTPQLIIEDIAMNQQQILDYRSKRKQVPYTDHEANMIVLIHPKSDKTNSNEYF
YGEIVEGHFDKVVLKDLPEKMEDLAITLNHMNFSQLYLVLQHSNSIYFEGMPHMDTFKKC
YKALITKQQLDLQQHGMHLCQYLNVKPNILKFMLKVFLDLNFIVEENGIIKINNQPDKRS
IESSRIYQLRQHRMEVEQRLLYDEFTQIKEWIKSQLS
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgattaaatcgaaatataaatggcatttacaacaaccaactgaatatatctcaggtcaa
gtcatggctaaatttaaattaacgcctatagttaagaaaattttagaaagtaagtcactt
gttgaagaaaatcaaattgatgctattatcaatgatggtgttattgattatgatccattt
aaattaagcgacatgtctaaagcagttgaacggatcaatactgctattgacaataaagaa
aagatacttgtatatggagattatgatgcagatggtgtaacttctactacaatattagtt
acgacattacaacgtcttggagcacaagttggttggtatattcctaatcgattttctgaa
ggttatggtccgaatgaattagcctttaaaaatgctcatgatgaaggtatttcattaatt
attactgtagataatggtatacaaggacataatgaaattgacatggttcaaaagttaggt
gtagatgttatagttacagatcaccatgaaataggaaacactttaccgttagcttatgct
attgttcatccaatgcatcctaattttgaatatccttttcaacaactttgtggtgcaggt
gtcgcatacaaattagcgcaagcacttttaggtgatgtacctcattattttaaagcttta
gtagcgataggtaccatagctgatttagtatctttaacggacgagaatcgttcattagta
aaacaaggtttagctcaattaaatgatgactgtcctgttgccatcaaagcgttattaaat
gaagctggctataatgatgaaattaatgaagaaacgataggatttattatcggaccgaga
ttaaatgcagtaggacgtttagaggatgcatcgcttgcctgtgaactattaatgaccgag
gatgaagaagaagcagtatttttagctgaacaagttgagcattttaatagagaacgtaaa
gatatagtagcagctattactgaagaagctatggctatggctgaaacgcaagttaatgat
ggaaacttatttttattattagctaaagaaaattggcatgaaggtgtcttagggattgta
gcttctaaaatagtagaaacttatgcgttaccgacattaattttaaatattgatcgagaa
caaaatcatgccaagggttcagcaagatcgatagcacaggtatctatgtttgaaatttta
aatgcacatcacgatttaattgccaaatttggaggccatcatatggcagcaggtatgaca
atgaacatagataacattgacgagctatctactggtctaaatcaatggatgacaacgtta
cagcaaacgacatctttagatcctgtgaaaaaggtagatgttatgttgaatgaacaagat
ataacaatcaaaaatattaaagatattaataaattgcgaccttttggtacagattttaat
aagcctttatttgaactgaatgacttaacagttggttcagttaaagctatcggtcaagat
aacaaacatttgaaattagctttaggtgacaataagataactgctttatattggcaacat
ggtcatttagcttctgaattacaagatcaacagcctattaatgtactcgctaatatacaa
attaatgactggaatggcaatcaaacaccacaacttattattgaagacattgccatgaat
caacaacaaattcttgattatcgtagtaaacgtaaacaagtaccttatacagatcatgaa
gctaatatgattgtgttgattcatccgaaaagtgacaagactaatagtaatgaatatttt
tatggtgaaatagttgagggtcattttgataaagttgttttaaaagatctaccggaaaaa
atggaagatttagcaataactttaaatcatatgaatttttcacaattatatttagtgttg
caacatagtaattcaatttattttgaaggcatgcctcatatggatacgtttaaaaagtgc
tataaagcattaatcacaaaacaacaattagatttacaacaacatggtatgcatttatgt
caatatttaaatgttaaacctaatattttaaaatttatgttgaaagtatttttagattta
aactttatcgtagaagaaaatggtataattaagataaataaccaaccagataaaaggtct
attgaatcaagtagaatttatcagttaagacagcataggatggaagttgaacaacgtctt
ttatatgacgaatttacacaaattaaggaatggattaagtcacaattgtcttga
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