Sphingomonas sinipercae: G7078_02075
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Entry
G7078_02075 CDS
T07461
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ssin
Sphingomonas sinipercae
Brite
KEGG Orthology (KO) [BR:
ssin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
G7078_02075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssin03019
]
G7078_02075
03009 Ribosome biogenesis [BR:
ssin03009
]
G7078_02075
04131 Membrane trafficking [BR:
ssin04131
]
G7078_02075
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssin04147
]
G7078_02075
Messenger RNA biogenesis [BR:
ssin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
G7078_02075
Ribosome biogenesis [BR:
ssin03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
G7078_02075
Membrane trafficking [BR:
ssin04131
]
SNARE
SNARE associated proteins
Others
G7078_02075
Autophagy
Aggrephagy
Other aggrephagy associated proteins
G7078_02075
Exosome [BR:
ssin04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
G7078_02075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_5
AAA_22
AAA_2
CDC48_2
AAA_33
AAA_14
IstB_IS21
TIP49
AAA_28
nSTAND3
AAA_lid_PRS2_C
AAA_18
AAA_24
NPHP3_N
RNA_helicase
Mg_chelatase
AAA_3
AAA_7
AAA_11
DUF815
AAA_30
Sigma54_activat
Zeta_toxin
AAA_17
AAA_19
TsaE
ATPase
Vps4_C
Parvo_NS1
NB-ARC
MazE_antitoxin
bpMoxR
ATP-synt_ab
Motif
Other DBs
NCBI-ProteinID:
QIL01694
UniProt:
A0A6G7ZL36
LinkDB
All DBs
Position
385288..387657
Genome browser
AA seq
789 aa
AA seq
DB search
MADTDTLDRTKGRRVQVANLPPGDSGRGIARLPEKLMTELGLAEGDTIEIVGQRSTAARA
IRPYGEDEGLEIVRLDGLQRANAGIGSGDFVEIRKVKSKAATRVVFAPAQDNVRLQGSSE
ALQRTFAGRPLCEGDVVATAGHQRVNADMPDAVRQLLNAPAFAMQEVRMVVVTATPKGVV
HIDESTKVELLPEYLGGKPGERRADVTYDDLGGMRDTIDSLREMVELPLRHPELFQRLGI
DPPKGVLLHGPPGTGKTRLARAVANESSAQFFHIAGPEIMGSAYGESERKLRELFEQAAA
AAPSIVFIDEIDSIAPKRGQVQGEAEKRLVAQLLSLMDGIEPRQNLVVIAATNRPEAIDE
ALRRPGRFDREIVVGVPDEQGRREILQIHTRGMPLAADVDIGALAKRTYGFVGADLAALM
REAAMEAVRRIMPRINPQEDTIPTEVLDALSVEQRDIENAIKRVQPSAMREVMVEAPSIG
WDDIGGLDNAQEKLREGIELPLKHPEAFKRIGIRPAKGFLLYGPPGTGKTLLAKAAARES
NANFIATKSSDLLSKWYGESEQQIARLFARARQVAPTVIFIDEIDSLVPARGGGLGEPQV
TERVVNTILAEMDGLEELNSVVVIGATNRPGLIDPALLRPGRFDELIYVGPPDTAGRRRI
LAIHAKAMPLADDVDLEDFARRTDRFTGADLEDLVRRAGLSALRRGLDSGTVTKADFEAA
LADTRASVTEQMLREYESIQQTLKSDAVRPMGGIGFVLPGMLRSRAGGKDASAPAEPAAA
PSQDDKDQG
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atggccgacactgacaccctcgaccggaccaagggccgccgcgtccaggttgcgaacctg
ccgccgggcgacagcggccgcggcatcgcccgcctgcccgaaaagctgatgaccgagcta
ggcctggccgaaggggacacgatcgagatcgtcggccagcgttcgaccgccgcccgcgcg
atccgcccgtatggcgaggacgaggggctggagatcgttcgcctcgacggcctgcagcgc
gccaatgccggcatcggttcgggcgacttcgtcgaaatccgaaaagtgaagtcgaaggcg
gcgactcgggtcgtgttcgccccggcccaggacaacgtccggctgcaaggctcgtcggaa
gcgcttcagcgcaccttcgccgggcggccgctgtgcgaaggtgacgtcgtcgccaccgcc
ggtcaccagcgggtcaacgccgacatgcccgacgcggttcggcagctgctcaacgcgccc
gccttcgccatgcaggaagtgcggatggtggtggtgactgcgacgccgaagggcgtggtc
cacatcgacgagtcgacgaaggtcgagctgctgcccgaatatcttggtggcaagcccggc
gagcgccgcgccgacgtcacctacgacgaccttggcggcatgcgcgataccatcgattcg
ctgcgcgaaatggtggaacttccgctgcgccaccccgaactgttccagcggcttggcatc
gacccgcccaagggcgtgctgctgcacgggccgcccggcaccggcaagacccggctagcg
cgggcggtcgcgaatgaaagcagcgcccaattcttccacatcgcgggcccggaaatcatg
ggctccgcttatggcgagagcgagcgcaagctgcgcgaactgttcgagcaggcggccgcc
gcggccccgtcgatcgttttcatcgacgaaatcgattcgatcgcgcccaagcgcgggcag
gtgcaaggcgaggcggagaagcgcctggtcgctcagctgttgagcctgatggacgggatc
gagccgcgccagaatctggtcgtgatcgccgccaccaatcgtcccgaagccatcgacgag
gcgcttcgccgccccggccgcttcgaccgcgagatcgtcgtcggagtccccgacgaacag
gggcggcgcgaaatcctgcaaatccatacgcgcggcatgccgctggcggcggacgtcgat
atcggcgcgctggccaagcgcacctacggcttcgtcggcgccgaccttgcggcgttgatg
cgcgaagctgcgatggaagcggtccggcggatcatgccgcggatcaacccgcaggaagac
acgatcccgaccgaggttctcgacgcgctgtcggtcgagcagcgcgacatcgaaaacgcc
atcaagcgcgtgcagccgtcggcgatgcgtgaagtgatggtcgaagcgccgtcgatcggc
tgggacgatatcggcgggctcgacaacgcgcaggagaaattgcgcgaagggatcgagctt
ccgctcaagcaccccgaggcgttcaagcggatcgggatccggccggcgaagggcttcctg
ctgtacggcccaccgggcaccggcaagaccttgcttgcgaaggcggcggcgcgggagagc
aatgccaactttatcgccaccaaatcgtccgatctgctgtccaaatggtatggcgaaagc
gaacagcagatcgcgcgcctcttcgcccgcgcccggcaggtcgcgccgacggtcatcttc
atcgacgagatcgacagcctggtgccggcgcgcggcggcgggcttggcgagccgcaagtg
accgagcgggtggtcaacaccatccttgccgagatggacgggctggaggaactcaacagc
gtcgtcgtgatcggtgcgaccaaccggcccgggctgatcgacccggcgctgcttcggccc
ggacgcttcgacgagctgatctacgtcggcccgcccgacaccgccgggcgccgtcggatc
ctggccatccatgccaaggcgatgccgctggccgacgacgtcgacctggaggacttcgcg
cggcgcacggaccggttcaccggagcggaccttgaggatttggtgcgccgggctggcttg
tcggcgctccgccgcgggctcgattccgggaccgtcaccaaggccgatttcgaggccgcg
ctcgccgatacgcgggcatcggtcaccgaacagatgctgcgcgaatatgaaagcatccag
cagacgctcaaaagcgatgcggtgcgaccgatgggcggcatcggcttcgtcctgccaggg
atgctccgctcgcgcgcgggcggcaaggacgcgtcagctccggccgagccggcggctgcc
ccaagccaggacgacaaggatcagggctga
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