Sphingomonas sinipercae: G7078_07895
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Entry
G7078_07895 CDS
T07461
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ssin
Sphingomonas sinipercae
Pathway
ssin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G7078_07895 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssin03400
]
G7078_07895 (mfd)
Enzymes [BR:
ssin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G7078_07895 (mfd)
DNA repair and recombination proteins [BR:
ssin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G7078_07895 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
MFD_D3
UB2H
Cas3-like_C_2
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QIL02711
UniProt:
A0A6G7ZP12
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All DBs
Position
1516626..1520117
Genome browser
AA seq
1163 aa
AA seq
DB search
MSEPLQRILGAREPLTLAGVPTGFLPSLASDLARAAHGRSKPGRAVIIAADEAAMRAIAD
TVPLFAAEVQVLALPAWDCLPYDRASPALRVMAERLSTLNALQQPLKKPQLLVATANGAT
QRVLTPFRVRQLTRRIAEGERIDREALIRQLSALGYQRAESVAEHGEFAVRGSIVDLYPS
GERLALRLDFFGDEIESLRRFDPADQRTTGAAEGFTLIPASEALLDEDNVKRFRARYREA
FGATATGDPLYQAVSEGRRLGGMEHWLPLFEEKLASPFDYLGDEDIVVRDPGADGAIDAR
LESVRDYFDNRTRAMQSEAGSYRPLEPAALYLGREEWEQAVKARPIHRTSGFREPESQRI
IDFAVDPARDFAPERARNDNVYEAVAKHLAKLRKDGRKVVLASYSKGARERLGGLLHDHG
VKAQKNVDNWQEALGSKTQPALMVLPLEHGFTSEDVAVITEQDMLGDRLVRRRKRRKSAD
AFLSELAALSPGDLIVHADHGIGKYAGLTQIPVSKTPHDCVAIEYAGGDKLYVPVENIEL
LSRYGSESESATLDRLGGEAWQRRKSRMKERIREIAGELINLAAMRATREAPTVQADSAF
PQFVDRFPYEETDDQDSAIRDVLDDLEAGKPMDRLVCGDVGFGKTEVALRAAFVTAMAGM
QVALICPTTLLARQHYSNFKDRLHGFPIELGRLSRLVTATEAKKTKEGLEKGTVDIVIGT
HALLAKGLKFKKLGLVIVDEEQHFGVAHKERLKSLKANVHVLTLTATPIPRTLQMAMTGL
RDLSVIQTPPVDRLAVRTYVTPWDPVVVREALLREHYRGGQSFFVVPRIADLADIEEWIR
DEVPEAKFITAHGQMSPTEVEERMSAFYDRKYDVLVSTTIVESGLDIPSANTLIVHRADR
FGLAQLYQLRGRVGRSKTRAYAYLTTPADTQVTEAAQKRLQVLANLDSLGAGFQLASHDL
DIRGAGNLLGDEQSGHIKEVGFELYQSMLEDAIVEQKAGGHARTDDFSPQISVDAPILLP
EPYVPDLDLRMGLYRRLGDLEDKRAIDEFAAEMIDRFGPLPVETSNLLKIVETKLNCKKA
MVAKLDIGARGAVATFADGGFPDLQGLLGYIERLKGSAKLRPDSKLAVSRNWATPEERLT
GALQLSLGLARVAAASERALEPA
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaccgctgcagcgcatccttggcgcgcgtgaaccgctgactctggccggcgtg
ccgacgggcttcctgccttcgctcgcgtcggacctcgcgcgggccgcacacgggcgaagc
aagcccggacgcgcggtcatcatcgcggcagacgaagcggctatgcgggcgattgccgac
accgtcccgctttttgccgcggaagtgcaggtgcttgccctgcccgcctgggactgcctg
ccgtacgatcgcgcgtcgccggcactgcgggtgatggcggagcgcctctcgaccctcaac
gccctgcaacaaccgctgaaaaagccgcaactgctcgtcgcgactgccaatggcgcgact
cagcgcgtgctgaccccgttccgcgttcgccagctgacccggcggatcgcagaaggcgaa
cggatcgaccgcgaagcgctgatccggcagctaagcgcgcttggctaccagcgggcggaa
tcggttgccgaacatggtgagttcgcggtccgtgggtcgatcgtcgatctctacccttcg
ggcgagcggctggcgcttcgcctcgatttcttcggtgacgagatcgaaagcctgcgccgc
ttcgaccccgccgaccagcggaccacaggggctgctgaaggcttcacgctgatcccggca
tcggaagccttgctcgacgaagataatgttaagcgattccgcgcgcgctatcgcgaggcc
ttcggcgcgaccgccaccggtgatccgctttaccaggcggtttcggaaggccggcggctg
ggcggcatggaacattggctgccgctgttcgaagaaaaactggcaagcccgttcgattat
cttggcgacgaggacatcgtcgtgcgtgatccgggcgcggacggcgcgatcgatgcccgc
ctggaaagcgtccgggattatttcgacaaccgcacccgcgccatgcagtcggaagccgga
agctaccgcccgctggagccggcagccctctatctcggccgcgaggagtgggagcaggcg
gttaaggcccggccgattcaccgcacgtcgggctttcgggagcccgagagccagcggatc
atcgacttcgccgtcgatccggcccgcgatttcgcgccggagcgggcgcgcaacgacaat
gtctatgaggccgttgccaagcacctcgccaagctgcgcaaggacggtcgcaaggtcgtc
ctcgccagctactcgaagggcgcgcgcgagcggctgggcggcctcctccacgaccacggc
gtcaaggctcagaagaacgtcgataactggcaggaagcgttgggaagcaagacccagccg
gcgctgatggtgctgccgctggagcatggcttcacgagcgaggacgtcgccgtcatcacc
gagcaggacatgcttggcgaccggctggtccgccgccgcaagcgccgcaagagcgccgac
gccttcttgtccgagctggcggcgctgtcgccgggcgacctgatcgtccacgccgatcac
ggcatcggcaaatatgccgggctgacgcaaatcccggtcagcaagacgccccacgattgc
gtcgccatcgaatatgccggcggcgacaagctctacgtcccggtcgagaacatcgaattg
ctgtcccgctacggtagcgaaagcgagagtgcgacgctcgaccggctgggcggcgaggcc
tggcagcgccgcaaatcgcggatgaaggagcggattcgcgagattgccggggagctgatc
aacctcgcggcgatgcgcgcgacccgggaagcgccgacggtgcaggccgacagcgcattc
ccgcagttcgtcgaccgcttcccctacgaggagaccgacgaccaggacagcgcgatccgc
gacgtgctcgacgatctggaggcgggcaagccgatggaccggctggtttgcggcgacgtc
ggcttcggcaagacggaggtcgcgcttcgggccgcgttcgtgaccgcaatggcgggcatg
caggtcgccctaatttgcccgacgacccttctcgcccgccagcattattccaacttcaag
gaccggctgcacggcttcccgatcgagcttgggcgcttgtcgcggctggtcaccgcaacg
gaagcgaagaagaccaaggaagggctcgaaaagggcacggtcgacatcgtcatcggcacg
cacgcgctgttggcgaaaggcctgaaattcaagaagctgggcctcgtcattgtcgatgag
gagcagcatttcggggtcgcgcacaaggaacggctgaagtcgctcaaagccaatgtccat
gtgctgacgctgacggcgactccgatcccccgcaccctacagatggcgatgaccggattg
cgcgacctgtcggtgatccagaccccaccagtcgaccggctcgcggtgcgcacctacgtc
acgccctgggatccggtggtggtgcgcgaggccctgctgcgcgaacattatcgcggcgga
caaagcttcttcgtcgtcccacggatcgccgaccttgcagacatcgaggaatggatccgc
gacgaggtgccggaagcgaagttcatcaccgcgcacggccagatgagcccgaccgaagtc
gaagagcggatgagcgccttctacgaccgcaaatatgacgtgctggtatcgaccacgatt
gtcgaaagcggactcgacatcccgtccgccaacacgttgatcgtgcaccgcgcagaccgt
tttggcctggcgcagctttaccagctccgcgggcgcgtcggtcggtcgaagacgcgcgcc
tacgcctatctgaccacgccggccgatacgcaggtgacggaggccgcacagaagcggctt
caggtcttggccaatctcgacagtcttggcgccggcttccagcttgccagtcacgacctc
gacattcgcggcgccggcaatttgctcggcgacgagcaatccggccacatcaaggaggtc
ggcttcgaactctaccaatcgatgctggaggacgcgatcgtcgagcagaaggccggtggc
catgcccgcaccgacgatttctcgccgcaaatcagcgtcgatgcgccgatcctgctcccg
gagccttacgtgccagatctcgaccttcggatggggctgtatcgccggctcggcgacctc
gaggacaagcgcgcgatcgacgaattcgcagccgagatgatcgaccgcttcgggccgctt
ccggtcgaaacatcgaacctgctgaagatcgtcgagaccaagctcaattgtaagaaggcg
atggtggccaagctcgatatcggggccaggggcgcggtggcgacgttcgccgatggcggc
ttccccgacctgcaggggctgctcggctatatcgagcggctcaagggctcggccaagctt
cgtccggacagcaagctggcggtctcgcgcaactgggcgactccggaagagcggctgaca
ggggcgctgcagctttcgctcgggctggcccgggtcgccgctgcttccgaacgggcgctg
gagccggcgtga
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integrated database retrieval system
