Sphingomonas sinipercae: G7078_09520
Help
Entry
G7078_09520 CDS
T07461
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ssin
Sphingomonas sinipercae
Pathway
ssin03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G7078_09520 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssin03021
]
G7078_09520 (rpoB)
03400 DNA repair and recombination proteins [BR:
ssin03400
]
G7078_09520 (rpoB)
Enzymes [BR:
ssin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G7078_09520 (rpoB)
Transcription machinery [BR:
ssin03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G7078_09520 (rpoB)
DNA repair and recombination proteins [BR:
ssin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G7078_09520 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
7TMR-HDED
RelB
Motif
Other DBs
NCBI-ProteinID:
QIL02990
UniProt:
A0A6G7ZQ11
LinkDB
All DBs
Position
complement(1827735..1831907)
Genome browser
AA seq
1390 aa
AA seq
DB search
MATKAIDAPHKKSSGAKTNSRRIRKIFGNIHEISEMPNLIEVQRESYEQFLRSDPAIGYV
SGLEKTLRSVFPIEDFAGTAHLDFDRYELEPPKYDTDECRQRGLTYAAPMRVTLRLTTFE
IDPDTEAKSVIDIKEQDVYMGDMPLMTMNGTFIINGTERVIVSQMHRSPGVLFDHDRGKT
HASGKYLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTALLHALGLSSEEILNTF
YKTVTYGRGKNGWQIPYTPEAWRGQKPLHDIADAKTGEIIFKAGEKITPRRANQVAKDGL
KDLVIPTEEIFGRFSAYDLINEKTGEIYVEAGDEVTPENLEKLDAAGVKTLELLDIDYVN
TGPWIRNTLKADKSEDGDSALSDIYRVMRPGEPPTRETADALFYGLFFDSERYDLSAVGR
VKLNMRLGLDVEDTVTTLRREDIIAVVQELVNLKDGKGEIDDIDNLANRRVRSVGELLEN
QYRVGLLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLS
EVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSRVN
KYGFIETPYRRVVDNKVTEEVVYLSAMEEAKHTIAQANAELTKDGSFGEEIVSSRRNGDF
LMAPRDQITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQAEAPLVGT
GMEETVARDSGAAIAARRSGVVDQVDAARIVVRATGVDLKPGESGVDIYTLMKFQRSNQN
TCINQRPLVKVGESVAAGQIIADGPSTQFGELALGRNVLVAFMPWNGYNYEDSILISERI
VKDDVFTSIHIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIIYIGAEVEPGDI
LCGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVEVRVFNRHGIDID
DRTRAIQTEEKERLKKDADDERAILNRATFARLREMLNGQVATAAPKGIKKGATLDEATL
EGVDRHDWWKIAVKDDSRQSDIEALKGQYDEAVNVIRRRLEDRVEKLERGDELPPGVLKM
VKVFVAVKRKLQPGDKMAGRHGNKGVISRILPNEDMPFLEDGTPVDIVLNPLGVPSRMNV
GQIFETHLGWAARGLGQQIQEMLEGIHDRGKDIAGKDIQTVRAKLKSMYGPNYDADIDAR
DDDGVMELARNLVGGLPMGTPVFDGAREPDVGDMLEMAGLHRSGQVTLFDGRTGNPFDRQ
VTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAA
YTLQEMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELDSVAD
ENDPPAIAAE
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggccaccaaagcgatcgacgcaccccacaagaaatccagtggggcgaagaccaactcg
cggcgaatccgcaagattttcggcaacatccacgaaatttcggagatgccgaacctgatc
gaggttcagcgggaaagctacgagcagttccttcgctccgacccggcgatcggctatgtt
tccgggctcgagaagacgcttcggtcggtattcccgatcgaggacttcgccggcaccgcg
cacctcgacttcgaccgctatgagctcgagccgccgaagtacgacaccgacgagtgccgc
cagcgcgggctgacctatgccgcgccgatgcgcgtgaccctgcgcctgaccacctttgaa
atcgatccggataccgaggccaagtccgtcatcgatatcaaggagcaggacgtttacatg
ggcgacatgccgctcatgaccatgaacggcaccttcatcatcaacggcaccgagcgcgta
atcgtcagccagatgcaccgttcgccgggcgtcctgttcgaccacgaccgcggcaagact
cacgccagcggcaagtatctcttcgccgcccgcgtgatcccgtaccgcggcagctggctc
gacttcgagttcgacgccaaggacatcgtcaacgtccgcatcgaccgcaagcgcaagctg
ccggtcaccgcgctgctgcacgcgcttggcctgtcgagcgaggaaatcctcaacaccttc
tacaagacggtgacctacggccgcggcaagaacggctggcagatcccgtacacgccggaa
gcctggcgcgggcagaagccgctgcacgacatcgccgacgccaagaccggcgagatcatc
ttcaaggccggcgagaagatcacgccgcgccgcgccaaccaggtcgccaaggatggcctc
aaggacctggtcatcccgaccgaggaaatcttcggccgcttctccgcctacgacctgatc
aacgagaagacgggcgagatctacgtcgaagccggtgacgaagtgactccggaaaatctc
gagaagctggatgccgccggcgtcaagacgctcgagctgctggacatcgattacgtcaac
acgggtccgtggatccgcaacacgctcaaggccgacaagtcggaagatggcgatagcgct
ttgtccgacatctatcgcgtcatgcgccccggcgagccgccgacgcgcgagacggccgat
gccttgttctacggcctgttcttcgattccgaacgctacgacctcagcgccgtgggccgc
gtgaagcttaacatgcgccttggcctcgacgtcgaggacacggtcaccaccctgcgccgc
gaagacatcatcgcggtcgtccaggaactggtgaacctgaaggacggcaagggcgagatc
gacgacatcgacaaccttgccaaccgccgcgtccgctcggtcggcgaactgctggaaaac
cagtatcgcgtcgggctgctgcgcatggagcgcgcggtcaaggagcggatgagcagcgtc
gacgtgtcgacggtgatgccgaacgacctgatcaacgccaagccggcggtcgccgcggtg
cgcgaattcttcggctcctcgcagctgtcgcagttcatggaccagaccaacccgctgtcc
gaagtcacgcacaagcgccgcgtttcggccctcgggccgggcggtctcacccgcgaacgc
gccggcttcgaagttcgcgacgttcacccgacccactacggccggatctgcccgatcgag
actccggaagggccgaacatcggcctgatcaactcgctcgccagcttcagccgggtgaac
aagtacggcttcatcgaaaccccgtaccgccgcgtggtcgacaacaaggtgaccgaagag
gtcgtctatctgtcggcgatggaagaggccaagcacacgatcgcgcaggccaacgcggaa
ctgaccaaggacggcagcttcggcgaagagatcgtctcgtcgcgtcgcaacggcgacttc
ctgatggcgccgcgtgaccagatcacgctgatggacgtcagtccgaagcagctggtgtcg
gtcgccgcgtcgctcatcccgttccttgagaacgatgacgccaaccgcgcgctgatggga
tcgaacatgcagcgccaggcggttccgctgctgcaggcggaagcgccgctggtcggcacc
ggcatggaagaaacggttgcccgcgactccggcgccgcgattgccgcgcgccgttcgggc
gtcgtcgaccaggtggatgccgcgcgtatcgtcgttcgtgcaaccggcgtcgacctgaag
ccgggcgagtccggcgtcgacatctacacgctgatgaagttccagcggtcgaaccagaac
acctgcatcaaccagcgcccgctggtgaaggtcggtgaatcggtcgctgccgggcagatc
atcgccgacggcccgtcgacccagttcggcgagctcgcgctcggccgcaacgtgctcgtc
gcgttcatgccgtggaacggctacaactatgaggattcgatcctcatcagcgaacgcatc
gtcaaggacgacgtcttcacctcgatccacatcgaggaattcgaagtcatggcccgcgac
accaagcttgggccggaagacatcacccgcgacattcccaacgtcggcgaggaagcactc
cgcaacctcgacgaagcgggcatcatctacatcggtgccgaggttgagccgggcgacatt
ctgtgcgggaagatcacgccgaagggcgaaagcccgatgacgccggaggaaaagctcctc
cgcgcgatcttcggtgaaaaggcctcggacgttcgcgatacctcgcttcgactgccgccg
ggcgttgccggcaccgtcgtcgaagtgcgcgtgttcaaccgtcacggcatcgacatcgac
gaccgtacccgcgccatccagacggaagagaaggagcggttgaagaaggacgccgacgac
gagcgtgcgatcctcaaccgcgcgaccttcgcccgcctccgcgaaatgctcaacgggcag
gtcgcgaccgcggcgccgaagggcatcaagaagggcgccaccctcgacgaagcgaccctg
gaaggcgtcgaccgccacgactggtggaagatcgccgttaaggatgacagccgccagtcg
gacatcgaagcgctcaagggccagtacgacgaggcggtcaacgtcattcgccgtcgcctt
gaggaccgcgtcgagaagctcgagcggggcgatgagctgccgccgggcgtgctgaagatg
gtcaaggtgttcgtcgcggtgaagcgcaagctgcagccgggcgacaagatggccggccgg
cacggcaacaagggcgtgatcagccgcattttgccaaacgaggacatgccgttcctggag
gacgggaccccggtcgacatcgtgctgaacccgctgggcgtgccgtcgcgcatgaacgtc
gggcagatcttcgaaacgcacctcggttgggcggcccgcgggctcggccagcagatccag
gagatgctcgaggggatccatgaccgcggcaaggacattgccggcaaggacattcagacc
gtccgggccaagctcaagtccatgtacggtccgaactatgacgccgacatcgacgcgcgc
gacgacgatggcgtgatggagcttgcccgcaacctggtcggcggcctgccgatgggcacg
ccggtgttcgacggcgcgcgcgaaccggatgtcggcgacatgctcgaaatggccggcctt
caccgttcgggtcaggtgaccttgttcgacggccgcaccggcaacccgttcgatcgccag
gtgaccgtgggctacatctacatgctcaagcttcaccaccttgtggacgacaagatccac
gcacgttcgatcgggccgtacagcctcgtcacccagcagccgctgggcggtaaggcgcag
ttcggcggccagcgcttcggcgagatggaggtgtgggcgctgcaggcgtacggcgccgcc
tacacgctgcaggaaatgctgacggtgaagtccgacgacgtggtcggccgcaccaaggtg
tacgaagcgatcgtcaagggagacgacacgttcgaggccggcattccggaaagcttcaac
gtgctcgtcaaggaaatgcggtcgctcggccttaacgtcgaactcgacagcgtcgccgac
gagaacgacccgccggcaatcgcagccgaataa
DBGET
integrated database retrieval system
