Streptomyces sirii: WAB15_12365
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Entry
WAB15_12365 CDS
T11107
Name
(GenBank) DNA-formamidopyrimidine glycosylase family protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ssir Streptomyces sirii
Pathway
ssir03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ssir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
WAB15_12365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssir03400
]
WAB15_12365
Enzymes [BR:
ssir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
WAB15_12365
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
WAB15_12365
DNA repair and recombination proteins [BR:
ssir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
WAB15_12365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
Zn_ribbon_8
Zn_ribbon_RRN7
Ribosomal_S13
Prok-RING_1
Motif
Other DBs
NCBI-ProteinID:
WXK76726
LinkDB
All DBs
Position
2747131..2747997
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AA seq
288 aa
AA seq
DB search
MPESPEVEALGRFLDDHLAGRTVAGAHLVSVHALKTYDPPLGALAGRAFDGVGRHGKFLD
LRAGELHLVVHLARAGWVRWSDRVPTAPPRPGKGPLALRVRLAEPPGAGFDVTEAGSQKH
LAVYVVTDPREVPGIARLGPDPLSAAFTPASFAGALQGERRQIKGVLRDQSVLAGIGNAY
SDEILHTARLSPFKPASGLCEEEVARLYEVIGATLTDAVERCRGLAPEELKAAKKSGLRV
HGRTGEPCPVCGDTIREVSFSDSALQYCPTCQTGGKVLADRRLSRLLK
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaatcgccggaggtggaggcgctcggccggttcctggacgatcacctggccggc
cggaccgtggccggtgcccacctggtctccgtccatgcgctcaagacctacgatccgccg
ctcggcgccttggcgggccgggcgttcgacggtgtgggacggcacggcaagttcctggat
cttcgggccggcgaactgcatctggtcgtccacctggccagggcgggctgggtgcgctgg
agcgaccgggtgccgaccgctccgccgcgccccggcaaggggccgctggcgcttcgggtg
cggctcgccgaaccccccggtgcgggcttcgacgtgaccgaggcggggagccagaagcac
ctggcggtgtatgtcgtcaccgatccgcgggaggtgcccgggatcgcgcggctcggcccc
gaccccctctccgcggccttcaccccggcgtcgttcgccggcgcgctgcagggtgaacgc
cgccagatcaagggcgtactgcgtgatcagagcgtgctggccggaatcgggaacgcctac
tccgacgagatcctgcacacggcgcggttgtccccgttcaaaccggcctccgggctctgt
gaggaggaggtggcccggctgtacgaggtgatcggcgcgacgctcaccgacgcggtcgaa
cggtgccgaggactggcgccggaggaactcaaggcggcgaagaagagcggccttcgggtc
cacgggcggaccggggaaccctgcccggtctgcggcgacacgatccgcgaggtgtccttc
agcgactcggcgctgcagtactgccccacctgccagaccggcggcaaggtcctcgcggac
cggcggctgtccaggctgctgaagtag
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