Streptomyces sirii: WAB15_14930
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Entry
WAB15_14930 CDS
T11107
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ssir Streptomyces sirii
Pathway
ssir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WAB15_14930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssir03019
]
WAB15_14930
03009 Ribosome biogenesis [BR:
ssir03009
]
WAB15_14930
Enzymes [BR:
ssir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
WAB15_14930
Messenger RNA biogenesis [BR:
ssir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WAB15_14930
Ribosome biogenesis [BR:
ssir03009
]
Prokaryotic type
rRNA processing factors
WAB15_14930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
HC2
Motif
Other DBs
NCBI-ProteinID:
WXK77187
UniProt:
A0ABZ2QKX4
LinkDB
All DBs
Position
complement(3308658..3312353)
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AA seq
1231 aa
AA seq
DB search
MLEPIEPTESTPSQDRGIEDNHSPSDTLPPRRRRRAASRPAGPPTSGGAAESAVLSTETA
AASADPAPAEEPAAAAVTTGDAAKPARTRRRATRKATSPAGAPQPAAAEETETPAPVEEP
AAAVEAPAEAPQTEDAAPRRTRRRATRKVTAPAGAPQAEIAAEPVVAEASVPAAPVAEEE
APAVAAEEAKPARTRRRATRKVTAPAGAPQAEIAAEPVVAEASVPAAPVAEEEAPAVAAE
EAKPARTRRRATRKATAPAGAPQVTEETEAEEAPVATAAEPAEAPRRRTRRRAAEPVAEA
PRAEEEPIQEGPVRGRRRAQPPTAVFQAPVFAEPMFQTPESAAAAHAAALQEDVVTEQVP
EEQPTAGARRRRRRGAPAEPEQVAVAPAEEPEAAEEAEPETEPGEFAHDEDESAERPSRR
RRRGGRRRRRGETAEGAEEQPAEADEAEAEEAEERAEHPEDEAEEHAAGGSSSSRRRRRR
RRRSGDAAEAEAGHADDPERTVVKVREPRKKEEGTGADEVQSIKGSTRLEAKKQRRREGR
EQGRRRVPIITEAEFLARREAVERVMVVRQSGERTQIGVLEDDVLVEHFVNKEQATSYVG
NVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALGMANGPRRIETALKSGQSVLV
QVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKQILKKIVPEDA
GVIVRTAAEGASEDELARDVQRLQAQWEEIQKKAKASSTSSPSLLYGEPDMTVRVVRDIF
NEDFSKVIVSGDDAWQTIHGYVSHVAPDLVDRLQKWTSDVDVFATYRIDEQLMKALDRKV
WLPSGGSLVIDRTEAMVVVDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGI
IVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSE
SCVHCNGRGVIVHMDQPTTAGGGGKRKKKGKAAQAEPHVHEVEAAEPTPDGGAPELEPAA
VTEAELQPAVADTEEWFSSPAEAEAAAGRGRGRRRVSRKVSAPAGAPKAAEEAAAIVLPA
EPVAEPEPEKAAEPVAEAPAAEPAPARPRRRVTRKVTAAAGSPEVSDDSAATVVITAPAA
EPEPAVAAEPVEGAEAEPAAAPAAKKTAKKAAAKKTAAKKTAAKKTTAKKAAAKKTTTAK
KATAKKTATKKATTKKAAAKKTAAAEQSSVA
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagcccattgagcccaccgaatccacgccgtcccaggaccgtggtatcgaggac
aaccactcacccagcgacacgctgccgccgcgccgcaggcgccgtgcggcctcccggccg
gccggtccgccgacgtccggcggcgccgccgagagcgcggtgctgagcaccgagaccgcc
gccgcgtccgccgatccggctcccgccgaggagcccgccgcggccgcggtcaccaccggg
gacgcggccaagccggcccgtacgcgccgccgtgcgacccgcaaggccacctccccggcc
ggggccccgcagccggccgccgccgaggagaccgagaccccggcccccgtggaggagccc
gctgccgccgtcgaggcgcccgccgaggccccacagaccgaggacgccgcaccgcgccgc
acgcgccgccgtgccacccgtaaggtgaccgcgcccgccggtgcgccgcaggccgagatc
gccgcggagccggtggtggccgaggcgtccgtgccggccgctccggttgccgaggaggag
gccccggcggttgccgccgaggaggccaagccggcccgtacacggcgccgtgccacccgt
aaggtgaccgcgcccgccggtgcgccgcaggccgagatcgccgcggagccggtggtggcc
gaggcgtccgtgccggccgctccggttgccgaggaggaggccccggcggttgccgccgag
gaggccaagccggcccgtacgcgccgtcgcgccacccgtaaggcgaccgcgcccgccggc
gcgccccaggtgaccgaggaaaccgaggccgaggaggcgccggtggccaccgccgccgag
cccgccgaggctccccgccgccgtacccgccgccgcgccgccgagccggtcgccgaggcg
ccccgtgcggaggaggagcccatccaggaggggccggtgcgcggccgccgccgggcgcag
ccgccgacggctgtcttccaggcgccggtcttcgccgagccgatgttccagaccccggag
agcgcggccgccgcccatgccgcggccctccaggaggacgtcgtcaccgagcaggtgccg
gaggagcagcccaccgccggcgcgcgccggcgccgccgccgtggcgccccggccgagccc
gagcaggtcgccgtcgccccggccgaggagccggaggcagcggaagaggccgagccggag
accgagccgggcgagttcgcccacgacgaggacgagtcggccgagcgtccctcgcgtcgc
cgccgccgcggtggccgtcgccgccgccgtggtgagaccgccgagggcgccgaggagcag
cccgccgaggccgacgaagccgaggccgaggaggccgaggagcgcgccgagcacccggag
gacgaggccgaggagcacgcggccggcggttccagcagcagccgtcgccgtcgccgtcgt
cgccgtcgcagcggtgacgccgccgaggccgaggccggccacgccgacgacccggagcgc
acggtcgtcaaggtccgcgagccccgcaagaaggaggagggcaccggcgccgacgaggtg
cagtcgatcaaggggtcgacgcgcctggaggccaagaagcagcgccgccgtgagggccgc
gagcagggccgccgccgggtgccgatcatcaccgaggcggagttcctcgcccgccgcgag
gccgtcgagcgggtgatggtcgtccgccagagcggcgagcgcacccagatcggcgtcctt
gaggacgacgtgctcgtggagcacttcgtcaacaaggagcaggcgacctcgtacgtcggc
aacgtctacctcggcaaggtgcagaacgtgctgccgtcgatggaggctgccttcgtcgac
atcggcaagggccgcaacgccgtgctctacgccggcgaggtcaacttcgaggcgctgggc
atggccaacggcccgcgccggatcgagaccgcgctgaagtccggccagtcggtgctggtg
caggtcaccaaggacccgatcggccacaagggcgcgcggctgaccagccaggtctcgctg
cccggccgctacctggtctacgtgcccgagggctcgatgaccggcatcagccgcaagctc
ccggacaccgagcgggcgcgtctgaagcagatcctcaagaagatcgtccccgaggacgcg
ggcgtcatcgtgcgcacggccgcggagggcgcgagcgaggacgagctggcgcgcgacgtc
cagcggctgcaggcgcagtgggaggagatccagaagaaggccaaggcctcctcgaccagc
tccccctcgctgctctacggcgagccggacatgaccgtccgggtcgtccgcgacatcttc
aacgaggacttctccaaggtcatcgtcagcggtgacgacgcctggcagaccatccacggc
tatgtctcgcacgtcgcccccgacctcgtcgaccggctgcagaagtggacctcggacgtc
gacgtcttcgcgacgtaccgcatcgacgagcagctgatgaaggcgctcgaccgcaaggtc
tggctgcccagcggcggttcgctggtgatcgaccggaccgaggcgatggtcgtggtcgac
gtcaacaccggcaagttcaccggccagggcggcaacctggaggagacggtcaccaggaac
aacctggaggcggccgaggagatcgtgcgccagctgcggctgcgcgacctcggcggcatc
atcgtgatcgacttcatcgacatggtgctggagtccaaccgggacctggtgctgcggcgg
ctgctggagtgcctgggccgggaccgtacgaagcaccaggtggccgaggtcacctcgctc
ggcctggtccagatgacccgcaagcgggtcggccagggcctgctggagtccttctccgag
tcgtgtgtgcactgcaacggccgcggcgtgatcgtccacatggaccagccgacgacggcc
ggcggtggcggcaagcgcaagaagaagggcaaggccgcgcaggccgagccgcatgtccac
gaggtcgaggcggccgagccgacgccggacggcggcgccccggagctggagcccgccgcc
gtgacggaggccgagctgcagcccgcggtggccgacaccgaggagtggttcagcagcccg
gccgaggccgaggcggccgccggacgcggccgtggccgccgccgggtgagccggaaggtg
tccgctccggcgggcgcccccaaggccgccgaggaggccgccgcgatcgtgctgccggcc
gagccggtggcggagccggagccggagaaggctgcggagccggtcgccgaggcgccggcc
gccgagcccgcgccggcccgtccgcgccgtcgggtgacccgtaaggtgaccgccgcggcg
ggctcgccggaggtgtccgacgactccgcggcgaccgtcgtgatcacggcgccggccgcc
gagccggagccggccgtggcagcggagcccgtcgagggcgccgaggccgagccggcggcg
gcgcccgcggccaagaagaccgcgaagaaggcggcggccaagaagacggccgccaagaag
accgcggcgaagaagaccacggccaagaaggcggcggcgaagaagaccaccaccgccaag
aaggccacggccaagaagaccgccaccaagaaggcgacgacgaagaaggcggcggccaag
aagaccgcggccgccgagcagtcctccgtggcgtaa
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