Streptomyces sirii: WAB15_19255
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Entry
WAB15_19255 CDS
T11107
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ssir Streptomyces sirii
Brite
KEGG Orthology (KO) [BR:
ssir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssir03016
]
WAB15_19255
Enzymes [BR:
ssir01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
WAB15_19255
Transfer RNA biogenesis [BR:
ssir03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
WAB15_19255
Prokaryotic type
tRNA splicing ligases
WAB15_19255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WXK77971
UniProt:
A0ABZ2QRD1
LinkDB
All DBs
Position
complement(4309155..4310348)
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AA seq
397 aa
AA seq
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MSYVEVPGAQVPIRMWTDPATVEDVAMQQLRNVATLPWIKGLAVMPDVHFGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVRTSLTANDLPGDLSRLRSKIEQAIPVGRGMHADPVDPG
RLHGFPTAGWGDFWARFDGVADAVKFRQERATKQMGSLGSGNHFWEFCIDDDQSVWIMLH
SGSRNIGKELAEYHMGVAQKLPQNQGLVDRDLAVFIADTPQMAAYRNDLFWAQEYAKHNR
EIMMALSQDVIRREFKKAKVTFDEVISCHHNYVAEERYDGMDLLVTRKGAIRAGGGDYGI
IPGSMGTGSYIVRGLGNAASFNSASHGAGRRMSRNAAKKRFSTRDLEEQTRGVECRKDSG
VIDEIPGAYKPIEKVIDQQRDLVEVVAHLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtcgaagtgccaggagcgcaggtaccgatccggatgtggacagacccggcc
acggtcgaggacgtcgcgatgcagcaactgcgcaacgtcgccacgctcccgtggatcaag
ggcctggccgtgatgcccgatgtgcacttcggcaagggcgctacggtcggctcggtgatc
gcgatgcgcggcgcggtctgcccggcggcggtcggcgtcgacatcggctgcgggatgagc
gcggtgcggacctcgctcaccgccaacgacctgcccggcgacctctcccggctccggtcg
aagatcgagcaggcgattccggtgggccgggggatgcacgccgatccggtcgaccccggg
cggctgcacggcttcccgaccgcgggctggggcgacttctgggcgcgcttcgacggcgtc
gccgacgcggtcaagttccgtcaggagcgtgccaccaagcagatgggttcgctggggtcc
ggcaaccacttctgggagttctgcatcgacgacgaccagtcggtgtggatcatgctgcac
tcgggatcgcgcaacatcggcaaggagctggccgagtaccacatgggcgtggcccagaag
ctgccgcagaaccaggggctggtcgaccgcgacctcgccgtcttcatcgcggacaccccg
cagatggcggcgtaccgcaacgacctgttctgggcgcaggagtacgccaagcacaaccgc
gagatcatgatggcgctgtcgcaggacgtgatccgccgggagttcaagaaggccaaggtg
accttcgacgaggtcatctcctgccaccacaactatgtggcggaggagcggtacgacggc
atggacctgctggtgacccgcaagggcgcgatccgggcgggcggcggcgactacggcatc
atcccgggctcgatgggcaccggctcgtacatcgtccgcggcctgggcaacgccgcgtcg
ttcaactccgcctcgcacggcgccggccgcaggatgagccggaacgccgccaagaagcgg
ttctccacgcgggacctggaggagcagacgcggggtgtggagtgccgcaaggactccgga
gtgatcgacgagatcccgggcgcctacaagccgatcgagaaggtcatcgatcagcagcgc
gacctggtcgaggtggtcgcccatctcaagcaggtcgtgtgtgtgaagggctga
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