Streptomyces sirii: WAB15_19580
Help
Entry
WAB15_19580 CDS
T11107
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ssir Streptomyces sirii
Brite
KEGG Orthology (KO) [BR:
ssir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssir03019
]
WAB15_19580 (hrpA)
Enzymes [BR:
ssir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
WAB15_19580 (hrpA)
Messenger RNA biogenesis [BR:
ssir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
WAB15_19580 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
WHD_HA2
AAA_22
nSTAND3
AAA_16
T2SSE
NACHT
PhoH
AAA_25
SLFN-g3_helicase
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
WXK78023
UniProt:
A0ABZ2QPJ5
LinkDB
All DBs
Position
4384676..4388761
Genome browser
AA seq
1361 aa
AA seq
DB search
MSSQPASALPNGAAPTLPSLLERLPELTLRDQQRLGRRLDGARRIRKPEARAAVLAEIAD
GVDEAELRVAQRRAAVPEITYPEELPVSQKKDDILAAIRDHQVVIVAGETGSGKTTQIPK
ICLELGRGVRGLIGHTQPRRIAARTVAERVAEELKTPLGEAVGWKVRFTDQVGGDTLVKL
MTDGILLAEIQTDRELRQYDTIIIDEAHERSLNIDFILGYLSQLLPRRPDLKVVITSATI
DPERFARHFGSFASVAASADAPEGDGGAEKPGAPIVEVSGRTYPVEVRYRPLLEEGGQDA
DRDQITAICDAVDELQAAGPGDILVFLSGEREIRDTADALNKKALPRTEVLPLYARLSHA
EQHRVFQRHTGRRIVLATNVAETSLTVPGIRYVIDPGMARISRYSYRTKVQRLPIEPISQ
ASANQRKGRCGRTSDGICIRLYSEDDFLSRPEFTDAEILRTNLASVILQMTAAGLGDIEK
FPFIDAPDRRNIKDGVDLLSELGALDARQKDPGKRLTQLGRRLSQLPVDPRLARMVLEAD
RNGCVREVMVIAAALSIQDPRERPSDKQQQADQQHARFKDESSDFLAFLNLWRYVREQQK
ELSSSAFRRMCRSEFLNYLRIREWQDIYSQLRTVAKTMGIHLNEEDAAPDRIHTSLLAGL
LSHIGLKNGGTEGGKDGAGKNEYLGARSAKFAVFPGSALFKKPPHWVMSAELVETSRLWA
RVNAKIEPEWVEPLAQHLVKRTYSEPHWEQKMAAVMAYERVTLYGVPIVAQRKVNYGRID
PETSRDLFIRNALVEGDWRTHHQFFHDNRKLLGEVEELEHRARRRDILVDDETLFDFYDQ
RIPADVVSGAHFDSWWKQKRRDEPELLNFEQSMLINESAEAVTKDDYPDSWRQGKLKFKV
TYQFEPGADADGVTVHIPLQVLNQVSSEGFDWQIPGLREQLVTELIRSLPKPIRRNYVPA
PNFAARFLDSTVPLQGALTASLAAGLQRMVGVPVEAADFDPSRIPDHLKITFRVVDERRR
KLAEAKDLEALRLKLKPKTRAAISKAFEQAAERPAKGGKGRAGEGAATAGPEQRTGLTSW
TIGALPRTFETRRAGQPLKAYPALVDEGSSVAVRLFDTEAEQLTAMWAGTRRLILLNIPS
NPAKFAQDKLSNQQKLALSRNPHGSIGALFEDCVTAAADRLIAARGGPAWDEESFRKLFD
AVRADLVDVTLKTIQQVQEVLAAWQACERRLKDTTFPSLLPSLADVKEQLAALIKPGFVT
THGAKRLPDLMRYLVAADRRLQQLPTNAERDRTRMAKVKEMQDEYAWLLEQFPPGRPVPA
AALEIRWMIEELRVSYFAHALGTAYPVSDKRIVKAVDAAAP
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtcagcctgcctccgccctgcccaacggcgctgcccccaccctgccctccttg
ctggagcgtctgcccgagctgacgctgcgcgatcagcagcggctggggcgccggctcgac
ggcgcgcgccggatccgtaagcccgaagcccgggccgccgtgctcgccgagatcgccgac
ggcgtcgacgaggcggagctgcgggtcgcccagcggcgcgccgcggtgccggagatcacg
tatccggaagagctgccggtcagccagaagaaggacgacatcctcgccgcgatccgcgac
caccaggtcgtgatcgtcgccggtgagaccggctcgggcaagacgacgcagatcccgaag
atctgcctggagctcgggcggggcgtacgcggcctgatcgggcacacccagccgcggcgg
atcgcggcccgtacggtcgccgagcgggtggccgaggagctgaagaccccgctgggcgag
gcggtcggctggaaggtccgcttcaccgaccaggtcggcggcgacaccctcgtcaagctg
atgacggacggcatcctgctcgccgagatccagacggaccgcgagctgcgccagtacgac
acgatcatcatcgacgaggcgcacgagcgcagcctcaacatcgacttcatcctcggctat
ctgtcgcagctgctgccccggcgcccggacctgaaggtcgtgatcacctccgcgaccatc
gacccggagcggttcgcgcggcacttcggctccttcgcctctgtggccgcgtccgcggac
gccccggagggcgacggcggggccgagaagcccggcgcgccgatcgtcgaggtctccggc
cgtacgtacccggtcgaggtgcgctaccgcccgctgctggaagagggcggccaggacgcc
gaccgcgaccagatcaccgcgatctgcgacgccgtggacgagctgcaggccgccggcccc
ggcgacatcctggtcttcctctccggcgaacgggagatccgcgacaccgcggacgcgctc
aacaagaaggcgctgccccgcaccgaagtgctccccctgtacgcgcggctgtcacacgcc
gagcagcaccgcgtcttccagcggcatacgggccggcggatcgtgctggccacgaacgtc
gccgagacctcgctgaccgtcccgggcatccggtacgtcatcgacccgggcatggcccgg
atctcccgctacagctaccgcaccaaggtccagcggctgcccatcgagccgatctcgcag
gccagcgccaatcagcgcaagggccgctgcggccgtacgagcgacggcatctgcatccgc
ctgtactccgaggacgacttcctctcccggcccgagttcaccgacgcggagatcctccgt
accaacctcgcctccgtcatcctgcagatgaccgcggccggcctgggcgacatcgagaag
ttcccgttcatcgacgcgcccgaccgccgcaacatcaaggacggcgtcgatctgctgagc
gagctgggcgcgctcgacgcccggcagaaggaccccgggaagcggctgacccagctgggc
cggcggctctcccagctgccggtcgacccgcggctggcgcggatggtgctggaggcggac
cgcaacggctgtgtccgcgaggtcatggtgatcgcggcggcgctgtccatccaggacccg
cgcgagcggccctccgacaagcaacagcaggccgatcagcagcacgcccgcttcaaggac
gagagctccgacttcctcgccttcctcaacctctggcgctacgtccgcgagcagcagaag
gagctgtcctcctcggccttccgccggatgtgccgcagcgagttcctgaactacctccgg
atacgcgagtggcaggacatctactcccagctgcgtacggtcgccaagaccatggggatc
cacctcaacgaggaggacgcggcaccggaccgtatccacacctccctgctggccggtttg
ctttcgcacatcggactgaagaacggcgggaccgagggcgggaaggacggggccggcaag
aacgagtatctgggcgcccgcagcgccaagttcgcggtcttccccggctccgcgctcttc
aagaagcccccgcactgggtgatgtccgcggagctggtcgagacctcccgcctgtgggcg
cgggtgaacgccaagatcgagcccgagtgggtcgaacccctcgcccagcacctggtcaag
cgcacgtacagcgagccgcactgggaacagaagatggccgcggtgatggcctacgagcgg
gtgaccctctacggcgtcccgatcgtcgcccagcgcaaggtgaactacggccggatcgac
ccggagacctcgcgcgatctgttcatccgcaacgccctggtcgagggcgactggcgtacc
caccaccagttcttccatgacaaccgcaaactgctcggcgaggtcgaggagttggagcac
cgcgcccggcgccgcgacatcctcgtggacgacgagacgctcttcgacttctacgaccag
cgcatcccggcggacgtcgtctccggggcgcacttcgactcctggtggaagcagaagcgc
cgggacgagccggaactgctcaacttcgagcagtcgatgctcatcaacgagtccgccgag
gccgtcaccaaggacgactacccggactcctggcgccagggaaagctgaagttcaaggtc
acctaccagttcgagccgggcgcggacgcggacggcgtgaccgtccacatcccgctccag
gtgctcaaccaggtctcctccgaaggcttcgactggcagatcccgggcctgcgcgagcag
ttggtgaccgagctgatccggtcgctgcccaagccgatcaggcgcaactacgtcccggcg
ccgaacttcgcggcccgcttcctggactccacggtgccgctgcagggcgccctgacggcc
tctctggcggccgggctgcagcggatggtgggcgtccccgtcgaggccgcggacttcgac
ccgagccggatccccgaccacctcaagatcaccttccgggtggtcgacgagcgtcgccgc
aagctcgccgaggccaaggacctggaggcgctgcggctgaagctcaagccgaagacccgc
gcggcgatctccaaggccttcgagcaggccgccgaacggcccgccaagggcggcaagggc
cgcgccggcgagggggcggccacggccggcccggagcagcgcaccgggctgacgtcctgg
acgatcggcgcactgccgcgcaccttcgagacccggcgcgccggccagccgctgaaggcc
tacccggcgctggtggacgagggcagcagcgtcgccgtacgcctcttcgacaccgaggcc
gagcagctgacggcgatgtgggcgggcacccgccgcctcatcctgctcaacatccccagt
aaccccgccaagttcgcccaggacaagctgagcaatcagcagaagctcgcgctgtcccgt
aatccccacggctcgatcggggcgctcttcgaggactgcgtgaccgccgccgccgaccgc
ctgatcgcggcccggggcggcccggcgtgggacgaggagtccttccgcaagctgttcgac
gcggtccgggccgatctggtggacgtcacgctgaagacgatccagcaggtccaggaggtg
ctcgccgcctggcaggcgtgcgagcgccggctgaaggacaccaccttcccctcgctgctg
ccctcgctcgccgacgtcaaggagcagctggcggcgctgatcaagccgggcttcgtgacg
acgcacggcgccaagcggctgccggacctgatgcgctatctggtggccgccgaccgccgg
ctgcagcagctgcccaccaacgccgaacgggaccgcacccggatggcgaaggtcaaggag
atgcaggacgaatacgcctggctgctggagcagttcccgccgggccgcccggtgccggcc
gcggccctggagatccgctggatgatcgaggaactccgggtgagctacttcgcgcacgct
ctggggaccgcgtatccggtctccgacaagcgcatcgtgaaggcggtggacgccgcggcg
ccctga
DBGET
integrated database retrieval system
