Streptomyces sirii: WAB15_36160
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Entry
WAB15_36160 CDS
T11107
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ssir Streptomyces sirii
Pathway
ssir03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ssir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
WAB15_36160 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssir03400
]
WAB15_36160 (ligD)
Enzymes [BR:
ssir01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
WAB15_36160 (ligD)
DNA repair and recombination proteins [BR:
ssir03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
WAB15_36160 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
SUFBD_core
Motif
Other DBs
NCBI-ProteinID:
WXK81008
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All DBs
Position
8154833..8155726
Genome browser
AA seq
297 aa
AA seq
DB search
MSPITIVEGRRLSLTNLDKVLYPETGTTKGEVLHYCTTTADALLPHLHDRPLSFLRYPDG
PDGQRFFTKNVPPGTPTWVQTCEVPHSTSGPTRQVLLQDLPALVWAANLVVELHTPQWTS
RAPGLADRLVVDLDPGAPATIVECCTAARWLHERLAADGLEVYAKTSGSKGLHLIAPIEP
TPSERTTAYAKRLAAEAARALPDLVVDKMTRSLRPGKVFIDFSQNAAAKTTAVAYTLRAR
ATPTVSTPVTWDEIADCTSPEQLSFLFSEIAPRCERHGELHAPLLDPDRARPLPKAA
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgatcaccatcgtggaggggcgacgcctctcgctgaccaacctggacaaggtc
ctctatcccgagaccggcaccaccaagggcgaggtgctgcactactgcaccaccaccgcc
gacgccctgctcccgcacctccacgaccggccgctgtccttcctgcgctaccccgacggg
ccggacggccagcgcttcttcaccaagaacgtgccgcccggcacccccacctgggtgcag
acctgcgaggtcccccattcgacgtccgggcccacccgccaggtcctgctgcaggacctc
cccgcgctggtctgggccgcgaacctggtcgtcgagctgcacacaccgcagtggacgagc
cgggcgccgggcctcgccgaccgcctcgtcgtcgatctggacccgggcgcaccggccacg
atcgtggagtgctgcaccgcggcgcggtggctgcacgagcggctggccgccgacggcctg
gaggtctacgcgaagacgagcggctccaagggcctgcacctcatcgcgcccatcgagccc
accccgtccgagcggaccaccgcctacgccaagcggctcgccgccgaggccgcacgggcc
ctgccggacctcgtcgtggacaagatgaccaggtccctgcgccccgggaaggtcttcatc
gacttctcccagaacgccgccgccaagaccaccgccgtcgcctacaccctgcgcgcccgc
gccacccccaccgtctccacgcccgtcacctgggacgagatcgccgactgcacttcaccg
gagcaactcagcttcctcttcagcgagatcgccccccgctgcgaacgccacggcgagttg
cacgcgccgctgctcgaccccgaccgcgcccgtccacttcccaaagcggcatag
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