Sphingobacterium siyangense: JVX97_05945
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Entry
JVX97_05945 CDS
T08059
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ssiy
Sphingobacterium siyangense
Pathway
ssiy03410
Base excision repair
ssiy03430
Mismatch repair
ssiy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssiy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JVX97_05945 (recJ)
03430 Mismatch repair
JVX97_05945 (recJ)
03440 Homologous recombination
JVX97_05945 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssiy03400
]
JVX97_05945 (recJ)
DNA repair and recombination proteins [BR:
ssiy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
JVX97_05945 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
JVX97_05945 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JVX97_05945 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
DSPc
Motif
Other DBs
NCBI-ProteinID:
QRY58996
LinkDB
All DBs
Position
complement(1462071..1463771)
Genome browser
AA seq
566 aa
AA seq
DB search
MQKRWVLKSKTDVKITNKLREELNINTVLAELLVSRGIETFDESKQFFRPQLSDLHDPFL
MRDMEKAITRIIQAIGNKEKILIYGDYDVDGTTAVAVVYSFFREFHSQLEFYIPDRYAEG
YGISTQGIDYAAANGFSLIIALDCGIKAVDKIDYANSKGIDFIIGDHHLPGEELPKAYAV
LDPKRADCEYPYKELSGCGIGFKIIQAFILTNGMDINACYQFLDLVAVSIASDIVPITGE
NRILSHFGLIKLNTNPCVGLKALIDLSNNRTKIFTVNDIVFQIGPRINAAGRIDHAKDAV
KLLISKSLQEAKDFSSSIDDQNNVRKDFDLKITEEALALIEDNALLKSRKSTVLYKADWH
KGVIGIVASRLTEKYYRPTIILTETNGHIAGSCRSVLGFDLYEALSECADLLEQFGGHKY
AAGLTMSLDNVTLFQDRFEEVVSRRISPEMLTQEILIDAKLALKDIDAKFFRILQQFEPF
GPQNESPIFLSKKVNAVGQAFIVGTNHLKMTVVQEDSPSFDCIGFGLAEHITHINSGQSF
DICYSIEENVWRNKRNLQLNIKGIKY
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaaggtgggtactaaaatctaaaactgatgtcaaaataaccaataaactgcgc
gaggaattaaacatcaacactgtattggcagagttgctcgtgagcaggggaattgagact
tttgacgaatcaaagcagttttttagacctcaattatcggatttgcacgatccatttttg
atgcgggacatggagaaagccatcacccgtattatccaagccatcggcaacaaagaaaaa
attctgatctatggagactatgacgtagacggtaccacagcggtagccgttgtttatagt
tttttcagggaatttcatagccagctggagttttatataccagaccgctatgccgaaggt
tatggcatctctacacaaggcatcgactatgccgcagcaaatggtttcagcttaattata
gcattggactgcggtatcaaggcagtcgataaaatagattacgcaaatagcaaaggaatt
gattttatcattggcgatcaccaccttcccggtgaagaacttcctaaagcctatgccgta
ttagatcccaagcgtgcagactgtgaatatccctataaagaactttcaggttgtggaatc
ggctttaaaattattcaggcttttatattgaccaatggcatggatatcaatgcctgctat
cagtttctagatcttgtggccgtgagtatcgcttcggacattgttccgattaccggtgaa
aatagaatactcagccactttggccttattaaacttaatacgaatccctgcgtcggacta
aaggcactgattgacttatcaaataatcgaacgaagatctttacggttaacgacatcgtg
ttccagatcggcccacgcattaatgctgcgggcagaatagaccatgccaaagacgccgtc
aagcttttgatttccaaatcgctacaagaagccaaagacttcagttcgagcatagacgat
caaaataatgtccgtaaagactttgatctcaaaataacagaagaagcgctggcactcatt
gaggacaatgccctacttaaaagccgcaaatccacggtattgtataaagccgactggcac
aaaggtgtcattggtattgtagcttcccgcctgaccgaaaaatattaccgtccgacgatt
atattgaccgaaacaaatggtcatattgcaggttcctgccgttcggtactgggttttgac
ttgtatgaagccttaagcgaatgcgccgatctattggagcagtttggcggtcataaatat
gctgccggactaacaatgtccttagataatgtcaccctattccaagatcgttttgaggaa
gtggtatcgcgacgtatcagtcctgaaatgctgacccaagaaattttgatcgatgctaag
ctagcgttgaaagatatcgatgcaaagttcttccgtattctccagcagtttgaacctttc
ggcccccaaaatgaatctcctattttcctcagtaaaaaggtaaatgcagtaggacaagct
tttattgtaggcaccaatcacctcaagatgaccgttgttcaagaagactctccttcattt
gactgtatcggttttggactggcagaacatatcacacatatcaattccggacaaagtttc
gacatctgttacagcattgaagagaatgtgtggcgcaacaaaagaaacttacagctaaac
atcaaagggattaagtattag
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