Sphingobacterium siyangense: JVX97_10860
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Entry
JVX97_10860 CDS
T08059
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ssiy
Sphingobacterium siyangense
Pathway
ssiy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ssiy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JVX97_10860 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssiy03400
]
JVX97_10860 (ligD)
Enzymes [BR:
ssiy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JVX97_10860 (ligD)
DNA repair and recombination proteins [BR:
ssiy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JVX97_10860 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
QRY59900
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All DBs
Position
2625101..2627839
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AA seq
912 aa
AA seq
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MGLSKYREKRSAGKTPEPFGGRSSGKELRFVVQKHDASHLHYDFRLEMNGVLKSWAVPKG
PSMDPSIKRLAMMVEDHPYDYRNFEGIIPKGQYGGGTVIVWDEGSYEALATDTNDVAKMD
KNLRHQLYSGKLKFRLYGEKLKGEFALVKAYGRGGNEWLLMKLEDQYATSKDVIAKDKSV
LSGKTIAEMEKSPDKVYGQPVVKKNSISKNKSKKSRNAAEIISDQLEEVPKKKKAETQKQ
AYNITDLLKKSPKQVFYTTVQPMLATLIDKPFDDQNWVYEVKWDGYRALAFMKNGKIELK
SRNDKSFNEKFYPVYDTLKSIAINAILDGEIVVLEKNGTANFAALQNWRSEADGDLVYYV
FDILWYDGKDLKGLSLLDRKAILKEVMPQNDLILLSEHFDTSGVGFLNEAKKLGIEGIMA
KRKESVYHIHERSSDWLKIKANRRQEVVIGGFTKNEGSSKLFSSLLVGLFEGKKLIYTGK
VGTGFSAKLQQELMAQFKPLVTKNSPFDDEPDINKSSRFRPSPPHAAVTWLHPNLVCEVS
FTEMTGDGVMRHPSFDGMRNDKNAKKVILEEEQAVNEIIGEQSKEGDGMRKNSKEGSSDK
KNYKTMLNPKDKTQVQKVNGHELKFTNLDKLFWPDEKITKRDLINYYEQAAPFILPYLKD
RPQSMNRYPNGIKEEGFYFKDVTDTAPEWAETYLYQSEADGRDRHYLVGKDEATLLYMAN
LGCIEMNPWSSTVGKPDNPTFCIIDLDPDKNTFDQVIETAQLTKQLLDDMAVPSYCKTSG
STGLHIYIPLGNKYNYDQSKEFAHIIVTLIHAELPDYTSLERTVRARKGKMYLDFLQNRP
HATIAAAYSVRPKPGATVSMPLHWDEVKKGLKISDFTLFNAIERMHELGDIFKPVLGKGI
DLKKVIDTLSKK
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgtcaaaatatcgcgaaaagcgttccgcaggaaaaacaccggaaccctttgga
ggaagatcaagcggaaaggagttacgcttcgtcgtgcagaagcatgatgcttcgcatctg
cattatgattttcggcttgaaatgaacggggtgctcaaaagttgggcggttcccaagggg
ccatctatggatccatctatcaaacgcttggccatgatggttgaagatcatccttacgat
taccggaattttgaaggtattataccaaaaggacagtatggtggtggtacagtgatcgtg
tgggatgaaggaagctatgaagctttagctactgatacaaatgatgttgcaaaaatggat
aagaatcttcgacatcagctttatagcggaaagctcaaattcagattgtacggagaaaaa
ttgaagggagaatttgctttggtaaaagcatacggaagaggaggaaatgaatggctactg
atgaagttggaagatcaatatgcaacaagcaaggatgtcatagcaaaggataaatccgta
ttgtcgggaaagacgatagcggaaatggaaaaatcgcccgataaagtctatggacagcct
gttgttaaaaagaatagcatatcaaaaaataaaagcaaaaaaagtaggaatgctgctgaa
ataatcagcgaccagttggaagaagtgcctaaaaagaaaaaggctgagacgcagaaacaa
gcgtataatatcaccgacttgctaaagaaatcaccgaagcaggtcttttatactacggtg
cagcccatgctggcgacgctgatcgacaagccttttgatgatcaaaactgggtatacgag
gtgaaatgggacggttatcgtgctttggcctttatgaaaaatggcaaaatagaactaaaa
tccagaaatgacaaaagcttcaatgaaaagttttatccagtatatgataccctgaaaagc
atcgcgatcaatgccatactcgatggtgagatcgttgtattggaaaaaaatggaacggcc
aattttgcggccctacaaaactggagaagtgaggcggatggcgatttggtatattatgta
tttgatatcctttggtacgatgggaaagatctaaaaggtctttcgctattggacagaaaa
gcgattttaaaggaggtaatgccgcaaaacgatttgattttattgagtgaacatttcgat
acatcgggcgttggatttttgaatgaagccaaaaaactcggtatagaggggattatggcc
aaacgcaaggaaagcgtttaccatatacatgagcgttcatctgactggttgaaaatcaag
gctaataggcgtcaggaggttgttattggcggttttacaaagaacgaaggctccagcaaa
ctgtttagtagcctattggtaggcctatttgaaggtaaaaagcttatttataccggaaag
gtcggaacaggattcagtgcaaaattacaacaagagctgatggcgcagttcaaacccttg
gtcacaaaaaatagcccgtttgatgacgaacccgatatcaacaaatcctcacgatttaga
cccagccctcctcatgccgctgtcacctggctacatcctaacctggtttgcgaagtgagc
tttacagaaatgaccggtgacggcgttatgcgacatccctcgtttgacggcatgcgtaac
gataaaaatgccaaaaaagtgattttggaagaagagcaggccgttaatgagattatcggc
gaacaatcaaaagagggagatgggatgcgaaaaaatagtaaggaaggcagttcggataag
aaaaactataaaacaatgctaaaccccaaagacaaaacccaggttcagaaggtaaatgga
catgagttaaaatttaccaacctcgataaactattttggcctgacgagaagatcaccaag
cgcgatttaattaattactatgagcaggctgcaccgtttattttaccataccttaaagat
cgaccacaaagtatgaatcgatacccaaatggtatcaaagaagaagggttctatttcaag
gatgttaccgatacagcaccggaatgggcagaaacctatctttaccaaagtgaggccgat
ggccgtgatcggcattatctggtcggaaaagacgaggctacattgttatatatggctaat
cttggctgtattgaaatgaatccctggagtagtaccgtcggaaaaccggataatccgacc
ttttgtatcattgatctggatccggataaaaatacatttgatcaggttattgaaaccgcc
cagctcaccaaacaacttttagatgatatggcggtaccttcgtattgtaaaacaagtggt
tccactggacttcacatatatataccattaggaaataaatataattacgatcagtccaag
gagtttgcgcatattattgtcaccctgattcatgcggagctacccgactataccagctta
gagcgaactgttcgtgctcggaaaggtaaaatgtatcttgattttcttcaaaatagacca
catgctaccattgctgcagcatattcagtacgtcccaagcctggagcgacagtgtccatg
ccattacattgggatgaagttaaaaaagggttgaaaattagtgatttcaccttgtttaat
gcgattgaaagaatgcatgagctgggtgatatctttaaacctgtattggggaaagggatc
gatctgaaaaaagtaattgatacactttcaaaaaaatag
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