Sphingobacterium siyangense: JVX97_12010
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Entry
JVX97_12010 CDS
T08059
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
ssiy
Sphingobacterium siyangense
Pathway
ssiy02020
Two-component system
ssiy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ssiy00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
JVX97_12010 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JVX97_12010 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssiy03021
]
JVX97_12010 (rpoN)
Transcription machinery [BR:
ssiy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JVX97_12010 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Tma16
DUF4158
DUF5616
MarR
LacI
Motif
Other DBs
NCBI-ProteinID:
QRY60116
LinkDB
All DBs
Position
complement(2912750..2914216)
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AA seq
488 aa
AA seq
DB search
MLKQTLQQKLLQKLSPQQIQFIKLLQVPTVSLDARIKEELEENPALEDGSLTNMTDPIEE
YPDKDPDDNFDNEDGFDSEDFSLEDYIQEDDFKDYGNGYDYGDDDDDRKEMPVAIQHSFY
EQLQQQLDLLALDDKHFLIGQQIIGSLDDDGYLRRPIINLVDDLAFGQNVMTDEQEVLDM
LKVIQDFEPAGIGARDLQECLLIQLQKKDTQNPTIKLAIKVVANYLEEFTKKHYDKLEKS
LGVSSEDLKNVVNEILKLNPKPGDSGAVAGKQLHIIPDFHISNNDGTLHLTLNGRNAPEL
RISRDYQHMFEHYEKSDQKDKKMKEAVQFVKQKLDSAKWFIDAIKQRQQTLLKTMNAIME
YQYDYFLTGDDRKLKPMILKDIADKIDMDISTVSRVANSKYVQTEFGTFLLKSFFSEAIQ
TDSGEEVSNKEVKKILEECIAKENKRKPLADEKLTEILKEKGYNIARRTVAKYREALNIP
VARLRKEL
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaacaaacattacaacaaaagctattacagaaattgtccccgcaacaaatacaa
tttataaaattgttgcaggttccgactgtttcattagatgcgagaatcaaggaagaatta
gaagaaaaccctgcgttagaagatggtagcttgactaatatgaccgatcctatagaagag
tatcccgataaagatccagacgataattttgacaatgaagatggatttgactcagaagac
tttagtttagaagattacatccaggaagacgatttcaaagattacggcaatggctatgac
tacggagacgacgatgacgaccggaaagaaatgcccgttgctattcagcactccttttat
gagcagttacaacaacaattagaccttttagctttagatgacaagcactttttaattggc
caacaaatcattggcagtctagatgacgacggctatttacgccgtccaataatcaatctt
gtcgacgacctcgcttttggtcaaaatgtaatgactgatgagcaggaagttctagacatg
ctaaaagtaattcaagattttgagcctgcgggaattggagcacgagatctgcaagagtgc
ctattgatccaattacaaaaaaaagatacacaaaatcccacaatcaaactcgctattaaa
gtcgtagcgaattaccttgaagaattcaccaaaaagcattatgataaattagaaaaatct
ttaggagtttcatcagaggatttaaaaaacgtcgtcaacgagatcctaaaacttaatcct
aaaccaggagattctggtgcagtcgcgggcaaacagcttcatattatcccggatttccat
atcagcaataatgatggaacactgcatttgactttaaatggccgaaatgcgcctgagctc
cgcataagtcgtgattaccaacacatgtttgaacattacgagaaatcggatcaaaaggat
aaaaaaatgaaagaggctgtgcaattcgtcaaacaaaaacttgactcagccaaatggttt
attgatgcaataaaacagcgtcaacaaaccttactaaaaacaatgaatgcaatcatggaa
taccaatatgattatttcctcactggtgatgatcgtaagttaaaaccaatgatattgaaa
gacatcgccgacaaaatcgatatggatatatctacggtgtcgcgggtagcaaattcaaaa
tacgtgcaaacagaattcggaacatttctcttaaaatcatttttctctgaagcgatccag
actgattctggtgaagaagtatccaataaagaggttaagaaaatattggaggaatgcatc
gcaaaagaaaataaacggaaacccttggctgacgagaaactaactgagatcctaaaagaa
aaaggctacaatattgctcggcgaacggtggcaaaatatcgggaagcattgaatattcct
gtagcaagattacgaaaagagctctaa
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