Sphingobacterium siyangense: JVX97_12760
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Entry
JVX97_12760 CDS
T08059
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ssiy
Sphingobacterium siyangense
Pathway
ssiy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssiy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JVX97_12760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssiy03019
]
JVX97_12760
Enzymes [BR:
ssiy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JVX97_12760
Messenger RNA biogenesis [BR:
ssiy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JVX97_12760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QRY60257
LinkDB
All DBs
Position
3076605..3077831
Genome browser
AA seq
408 aa
AA seq
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MRFDEFGFVPALEEGLESMMFEEATPIQEQTIPIIKEGKDMIACAQTGTGKTAAYMLPIL
DAIARNSRESILAIILVPTRELAMQIDQQIMGMSYYTGATSIAIYGGGDGMGYEQQKRAI
REGVNIIVATPGRLISHLTSMKIDLSHLKHFVLDEADSMLDMGFQDDILRIVSYLPKKKQ
MLLFSATMPMKIRSFARKILQEPVEVNIAISKPSEGIDQRVYLAYDQQKMDLLKNILKDP
NYVSVIIFASQKTTVKLLAQELQKQGIDAEGFHSDLEQSKREDIMARFRSRQVRVLVGTD
VISRGIDVVGISLVVNYDVPPDPEDYVHRIGRTARAATTGTAITFVNEKDQNRFAQIENL
IGYPIEQLPLPEGFEAGPTYNPAKKNPQHKKKRFNRNKNKNYQKAKRA
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
ttgagatttgatgaatttggctttgttccagctttggaagaaggtttagaaagtatgatg
tttgaggaggctacgccgatccaagaacagaccatcccgattattaaagagggaaaagat
atgattgcctgtgcacagacaggtacaggtaaaacagcagcttatatgttgccgatcctc
gatgcaatagcacggaattcaagggaatctatcctcgctattatccttgttccgacccgg
gaacttgctatgcaaattgaccagcagattatgggcatgtcttattatacgggtgcaaca
tccatagccatttatggtggtggtgatggtatggggtatgaacagcaaaaacgggccata
cgagagggggtaaatattattgttgctacgccgggaaggttgataagccatcttacctcc
atgaagattgatctctctcatttaaagcactttgttttggatgaagccgatagtatgctg
gatatgggatttcaagacgatattttacgtattgtaagttatctaccgaagaaaaagcag
atgcttttgttttcggcgacgatgccgatgaagatcaggtcttttgcccgaaaaattctg
caagagcctgtggaagtcaatattgccatttctaaaccttcggaagggatagatcaacgt
gtatatcttgcctatgatcaacagaaaatggatcttctaaagaatatactgaaggatccc
aactatgtatctgttattatttttgcatcccaaaaaactacagtcaaacttctcgctcag
gaattacagaagcaggggattgatgcggaaggtttccattcggatctcgagcagtcgaaa
cgggaagatatcatggctagattccggtctcgtcaggtacgggtactggtagggacagat
gtgatatctcgcggtattgatgtggtggggatcagtttggtcgttaattacgatgttcca
ccggatccggaagactacgtacaccgtattggacgtactgcgcgggcagcaactacagga
acagccattacctttgtcaatgagaaagaccaaaaccgtttcgctcagattgagaattta
ataggttatccgattgaacaacttccattgccagaggggtttgaagcgggacctacttac
aatcctgccaaaaagaatccacagcataagaagaagcgtttcaataggaataaaaataaa
aactatcagaaagctaaaagagcctga
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