Sphingobacterium siyangense: JVX97_13270
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Entry
JVX97_13270 CDS
T08059
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ssiy
Sphingobacterium siyangense
Brite
KEGG Orthology (KO) [BR:
ssiy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssiy03016
]
JVX97_13270
Enzymes [BR:
ssiy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
JVX97_13270
Transfer RNA biogenesis [BR:
ssiy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
JVX97_13270
Prokaryotic type
tRNA splicing ligases
JVX97_13270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QRY60354
LinkDB
All DBs
Position
3192977..3194368
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AA seq
463 aa
AA seq
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MGSKLAGKDLVKIGFPQNNIVNTALGLITRYRKKENKETILLELAELIEAPERFMGHKIW
GKVSEGLVKPVEVRMQELHSHCAPFSIFGENEIDEQAKRQLYDALRLPISRQGALMPDAH
TGYGLPIGGVLATENAVIPYGVGVDIGCRMSLSIFDLPGSYFKGREFQLKNILKENTKFG
LNDTHRDKHDHVVFSRTEFQEIPLLKSLLGKAYRQFGTSGSGNHFVELGIVELQTVREEW
GINPGQYMGILSHSGSRGLGANIAKHYTSLAAQQCPLPRHVQHLAWLDLASQEGQEYWMA
MNLAGEYAQACHADIHRRLAKALGGNPVVTIENHHNFAWKEFVNGEECIVHRKGATPAGK
GVLGVIPGSMTAPGFIVEGTGNPLSLQSASHGAGRVMSRSACKNNLTKSAMLKDLEAHGV
ELIGGALDESPRAYKDIHQVMKLQQELVTVLGTFTPKIVRMDK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaagtaaattagcaggaaaagatctcgtaaaaataggttttccacaaaataatata
gttaatacagctttaggcctgatcacaaggtatcgaaagaaggaaaataaagaaaccatt
cttcttgaacttgctgagttgatagaagctccggagcgatttatggggcataaaatatgg
ggaaaggtctctgaaggacttgttaaacctgtcgaagtacgcatgcaggagcttcattca
cattgtgctccatttagcatatttggtgaaaatgaaattgatgagcaggcaaaaagacag
ttgtatgatgcactgagattgcctatttcaaggcaaggtgcactgatgccggatgcacat
acagggtacggacttcccatcggcggagtactggccacagaaaatgccgttataccctat
ggtgtaggagtagatattggttgtcggatgagcctgtcgatattcgatttaccgggtagt
tatttcaaaggaagggaattccaactgaaaaatatattgaaggaaaacaccaaatttggt
ttaaatgacacacatcgtgataagcatgaccatgttgttttcagtagaactgaatttcag
gaaatcccactattaaaatccctattgggtaaagcttacagacaatttgggacttccggt
agtggaaatcactttgtcgaattgggcattgttgagcttcaaaccgtgcgggaggaatgg
ggaataaatccaggacagtatatggggattttatcccatagtggctctcggggcctgggg
gcgaatatcgctaagcattacacaagtcttgcagcgcaacaatgtccattaccgcgtcat
gtccaacatttggcctggttggatttagcaagccaagaaggacaggaatactggatggca
atgaatttggctggagagtatgcccaggcctgtcacgcagacatccaccgacgtttggcg
aaagcacttggcggtaatcccgtggtaacgatcgaaaatcatcataatttcgcatggaag
gaattcgtgaatggggaggaatgcatcgttcatcggaagggagcaacacctgcaggcaag
ggcgtgctgggggtgattcccggctcgatgacagcaccagggttcattgtggagggaacg
ggaaaccccttaagtttacagtctgcatcccatggagctgggcgtgtcatgtcgagatct
gcctgtaaaaataatttgacaaaaagcgctatgctgaaagatctggaagcacatggtgtg
gaattgattggcggcgcattggatgaatcaccacgtgcgtataaagatattcatcaggtg
atgaaattacaacaggagttggtaactgttctcggaacgtttactccgaagattgtacgt
atggacaaataa
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