Sphingobacterium siyangense: JVX97_13340
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Entry
JVX97_13340 CDS
T08059
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ssiy
Sphingobacterium siyangense
Pathway
ssiy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssiy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JVX97_13340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssiy03019
]
JVX97_13340
Enzymes [BR:
ssiy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JVX97_13340
Messenger RNA biogenesis [BR:
ssiy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JVX97_13340
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
PhoH
DEDD_Tnp_IS110
ERCC3_RAD25_C
EB1
Motif
Other DBs
NCBI-ProteinID:
QRY60367
LinkDB
All DBs
Position
complement(3213738..3214862)
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AA seq
374 aa
AA seq
DB search
MEFKQLSLIAPLLKAITETGYTHPTAIQQKAIPIVLQGNDLIGCAQTGTGKTAAFALPLL
QRLEETKTSGKLVPIRALILTPTRELAIQIGDNINLYRKYLKLNYCTIFGGVSQEKQVKE
IKKGVDILVATPGRLLDLMNQKIVSLDKIEILILDEADNMLDMGFIHDIKKILTKVPSKR
QTLFFSATMPPNIRKFAHGILHKPIEVDVTPVSSTAEKVNQSVFFVEKKEKIKLLTSILK
KLKHERTIVFSRTKHGADKIVKLLAKNGLRAAAIHGNKSQNARQKALGEFKDSHLKILIA
TDIAARGIDIEQLPLVINYDLPNVPETYVHRIGRTGRAGQEGKAISFCDVEERPYLADIE
KLIGLKIKIEKINK
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atggaatttaaacaactcagtttaatcgctccgcttttaaaagcaataacagaaacaggc
tatacacaccctactgcaattcaacaaaaagccattccaattgtattgcaaggcaacgac
cttattggttgtgcacaaacgggaaccggtaaaacggccgcttttgcacttccgctttta
caacgtcttgaagaaactaagacatcaggtaaactcgttcccattagagctttgattctt
acaccaacacgtgaactagccattcaaattggagacaatatcaacttataccgaaaatat
ctaaaactaaactattgcactattttcggtggagtaagccaagaaaagcaagttaaagaa
attaaaaaaggtgttgatattcttgttgctaccccaggccggttactggatttgatgaat
caaaagatagtttctctagataaaatcgagatcttgatattggacgaggcggacaacatg
ctggacatgggctttattcatgatatcaaaaagatcctgaccaaagtcccgtcaaaaaga
cagacattattcttctcggcaacgatgccgcccaatatccgtaaatttgcacatggcata
ttacacaagcctattgaagttgacgtcacccctgtaagctcaacagccgagaaagtaaat
caatctgtattttttgttgaaaagaaggagaagatcaaattattgacgagcatattaaaa
aagctgaagcatgagcgcactattgtattctcccgaacaaaacacggagcggataaaatc
gtcaagttgcttgcaaaaaatggcttgagagcagcggccattcacggaaataaatcgcaa
aatgcaagacaaaaagctttaggtgaatttaaggacagtcatcttaaaattttgatcgct
accgatattgcagcaagaggaatcgatatcgaacaactaccgcttgtgattaattatgat
ctcccaaatgtaccggaaacctatgttcatcgtattggtagaacaggaagagctggtcag
gaaggaaaagccatctctttttgcgatgtagaagaaagaccgtatttagctgatattgaa
aaattgatcgggttaaaaatcaagatagaaaagatcaataaatag
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