Sphingobacterium siyangense: JVX97_17180
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Entry
JVX97_17180 CDS
T08059
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ssiy
Sphingobacterium siyangense
Brite
KEGG Orthology (KO) [BR:
ssiy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssiy03032
]
JVX97_17180
03400 DNA repair and recombination proteins [BR:
ssiy03400
]
JVX97_17180
Enzymes [BR:
ssiy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JVX97_17180
DNA replication proteins [BR:
ssiy03032
]
Prokaryotic type
DNA Topoisomerases
JVX97_17180
DNA repair and recombination proteins [BR:
ssiy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JVX97_17180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QRY55760
LinkDB
All DBs
Position
complement(4040819..4041793)
Genome browser
AA seq
324 aa
AA seq
DB search
MKVKAGYTRKKIGKSFKYLDTSGSEVSDKKILERIMKLVIPPNWKDVWIAKSATSDLQAF
GFDQKERKQYIYHTKFVDQRQAAKFSNILFMGKYLQELRKISTKHLKHQVWDMDKLCAIA
FKIMDSTLIRIGNKRYTLTNKSYGLSTLEKRHVTIENNRISLAYKGKKGVFQQKSWANKQ
QAKLLEELLKMKGKRIFQIDSATCESTFCGAAFNQYLRENSTGQISCKSIRIWGASREAF
YQLAQTKQAEALNARKRQLNKVIKHVAEQLGNTKTVSQTYYIHPAIQRLFMEGRFPSIKS
KLPIAKLEDKLYRFLLKHTDKAIV
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtaaaagctggttatacaagaaagaaaataggcaagtcttttaaatatttagat
acatcaggatcagaagtatctgataaaaagatcttagaaagaataatgaaactggttatt
ccgcccaactggaaggatgtatggattgccaaaagtgcaaccagtgatctgcaagctttt
ggattcgatcaaaaagagcgtaaacaatatatctaccatacgaaattcgttgaccaacga
caagcggcaaagttcagcaatattctttttatgggtaaatatttgcaagaattaagaaag
atcagcactaaacatctcaaacatcaggtttgggatatggacaaattgtgtgcaattgct
tttaaaattatggacagtacattaattcgtatcggcaataagcgctatacactgaccaat
aagtcatatggcctaagcaccctggaaaaaaggcacgtcaccatcgaaaacaacaggata
tctttggcttataaaggtaaaaagggtgtttttcagcaaaagtcatgggctaataagcaa
caggctaagcttctggaagaacttttaaaaatgaagggaaaaaggatatttcagattgat
agtgctacctgcgaaagcacgttctgcggtgccgcctttaatcagtatctccgggagaat
tctacgggtcagatcagctgtaaaagcattcgtatttggggagccagtcgagaagctttt
taccagctcgcccaaacaaaacaggcggaggcacttaatgcccgaaaaagacagttaaac
aaggtcattaaacatgttgcagagcagctcggcaatacaaagactgtttcacagacttat
tatatccatcctgccatacaacgcttatttatggagggaagattccccagtataaaaagt
aaattaccgattgcgaaattagaagataaattataccgttttctgcttaaacacaccgat
aaggcaattgtttaa
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