Sphingobacterium siyangense: JVX97_17355
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Entry
JVX97_17355 CDS
T08059
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ssiy
Sphingobacterium siyangense
Brite
KEGG Orthology (KO) [BR:
ssiy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssiy03016
]
JVX97_17355
Enzymes [BR:
ssiy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
JVX97_17355
Transfer RNA biogenesis [BR:
ssiy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
JVX97_17355
Prokaryotic type
tRNA splicing ligases
JVX97_17355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QRY55791
LinkDB
All DBs
Position
4077732..4079153
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AA seq
473 aa
AA seq
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MENKRINGNDLIALGYKENHSLGVALKINSKRHGFTRLEMLEKFKSVLEDPTGYSEDAVF
GILAHAILGQEAVDKSLIALNETPAEYTIYGASEIETGAKVQMNIAMKLPVSVAGALMPD
AHQGYGLPIGGVLATNNAVIPYGVGVDIGCRMALSIFDLPASFLEDNLMTLKDIILRNSK
FGAGNGYLRHERVDHAVLDNELFTENSFLSALKDKAWTQLGSSGGGNHFVEFGIVEFEER
DEVLNIDNGAYLGLLTHSGSRGMGATIAAHYTKLAKSLCKLPYQAENLAYLDLDTHEGQE
YWLAMNLAGDYASACHEVIHEKITLALGAELLAKVENHHNFAWKETWNGQEVIVHRKGAT
PAAKGVMGIIPGSMATPGFLVRGKGESNAIQSASHGAGRLMSRTQAIKTLSSHDLHSMLK
DKGIMLLGAGMDEAPMAYKDIHTVMASQKDLVDVVAKFSPKIVRMADDGSRED
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataagagaataaatggcaatgatttaattgcattaggatataaagagaatcat
tccttgggcgtggcattaaagatcaatagtaaaagacacggttttacgcggttagaaatg
ctcgaaaagttcaagtctgtcctggaagatccgaccgggtattcagaagatgctgttttc
ggaattttggcccatgccatacttggacaagaggctgttgataagtcgttaattgcattg
aacgagactccggcggaatatacgatctatggcgcatctgaaatcgaaaccggggcaaaa
gtacagatgaatatcgctatgaaattgcctgtttcagttgccggagcgctgatgccggat
gcgcatcaagggtatggattaccaataggaggtgtactagcgaccaataatgccgtgatt
ccttacggtgtcggtgtcgatattggctgtcgtatggctttgtcgatctttgatttgcca
gcctcatttttggaagacaatttaatgaccttgaaagacattattctgcgtaatagtaag
tttggtgctggcaatggatatttgagacatgaacgtgtagatcatgctgtattggataac
gagttgttcactgagaacagcttcctttccgcattgaaggataaggcctggacgcaattg
ggatcttcgggtggggggaatcattttgtggagttcggtatagtcgaatttgaagaaaga
gatgaggttttgaacattgataacggagcctatttaggcttactgacccattcaggttca
agaggaatgggcgctaccattgctgcacattataccaagttggccaaatccttgtgtaag
ttgccttaccaagctgaaaatctagcctatttagacttagatactcatgaagggcaagaa
tattggttggcgatgaatcttgccggtgattacgcgtcagcctgccatgaagtgatccat
gaaaagattacgttggctttaggggccgaattgttggcgaaggttgaaaatcaccacaat
tttgcatggaaggaaacgtggaatggtcaagaggttattgtccatcgaaaaggtgctacg
ccagctgcaaaaggggttatggggattattccaggctccatggctacaccaggatttttg
gttcgtggaaaaggggagtcgaatgcgatacaatcggcatctcatggggcaggtcgactg
atgagccgtacgcaagcgattaaaacgctatcttcccatgatctccattcgatgcttaaa
gataaaggtattatgttgcttggagcagggatggatgaagcgccgatggcttataaagac
atccataccgtaatggcttcacaaaaagatcttgttgatgtcgtggcaaaattttcgccc
aagatagtccgtatggcagatgatgggagcagggaagattaa
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