Sphingobacterium siyangense: JVX97_23680
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Entry
JVX97_23680 CDS
T08059
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ssiy
Sphingobacterium siyangense
Pathway
ssiy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssiy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JVX97_23680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssiy03019
]
JVX97_23680
03009 Ribosome biogenesis [BR:
ssiy03009
]
JVX97_23680
Enzymes [BR:
ssiy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JVX97_23680
Messenger RNA biogenesis [BR:
ssiy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JVX97_23680
Ribosome biogenesis [BR:
ssiy03009
]
Prokaryotic type
rRNA helicases
JVX97_23680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QRY56967
LinkDB
All DBs
Position
5578621..5580498
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AA seq
625 aa
AA seq
DB search
MNPFLELGIREEVVNAISELGFEKPSEIQEKAIPVLLTGNDDFVGLAQTGTGKTAAFGLP
LLEQLDFSQKHPQALILCPTRELCLQISKDLEKFAKYVDNVHVVAVYGGANISDQLRQIR
RGVQIVVATPGRMLDIIGRNAIDFSNVKYVVLDEADEMLNMGFKEDINNILSETPDEKKT
WLFSATMPSEVRRIAKNYMTDPVELTVGTKNTGNANIEHHYYLIKAKDKYAAFKRIVDSN
PDIFGIVFCRTKIETQDIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRDRSLQLLIATD
VAARGIDVSDVTHVINFSLPDETENYTHRSGRTARAGKTGISLSLVNVKELSKIRHLEKI
IGKPFEKKQVPQGAEVCEKQLFSIVKKIENVEVNDEQISPFLPAIMENLESLSKEDIIKR
FASLEFNRFLDYYKNAPDLNIEARDGGREDRGDRRDGRSREGSKGYTRLFMNLGSVDEFS
RGDMLGFICNNANISGKSIGKIDLKGVFTFFEVQDAEVEKVFQGFQGVDYNGRQVRIEVS
GEARGEGRSDRGGRSRGGDRGGRREGGYRGGDRGGRREGGYGGGERSGRREGGFSGERRD
RGERSSNGGGFRDFSGKRKESKSKY
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgaacccatttttagaactgggaatccgtgaggaagttgttaatgccatctcagaatta
ggtttcgaaaaaccttctgaaattcaggaaaaagccattcctgttttattgactggtaac
gacgattttgtcggattagcccaaactggcacaggaaagaccgcggcatttggtcttcca
ttattagagcaattagacttttctcaaaaacacccacaggcattaatcctttgccctacc
cgggaattatgtttacaaatctcaaaagatttagaaaaatttgctaaatacgttgacaac
gtacatgttgttgctgtatatggaggtgcaaatatctcagaccagctacgtcaaattaga
cgtggagtgcaaattgtagtagcgaccccaggtcgtatgttggatatcatcggcagaaat
gcgattgatttttcaaatgtaaaatatgttgtattggatgaagcggatgagatgctcaat
atgggcttcaaagaagacatcaacaacattttgtcagaaactcctgacgagaaaaaaact
tggttattttcggcgacaatgccttctgaggtacgtcgtattgcaaagaattatatgacc
gatccagttgagcttactgtaggtacaaaaaacaccggtaatgccaacattgaacaccac
tattatttgatcaaagcaaaagataaatatgctgcattcaaacgtattgtggattcaaac
cctgatatctttggtatcgtattttgtcgtacaaaaatcgaaacacaggatatcgctgaa
gcgttgatcaaagatggttacaatgcagattcattgcatggtgacttatcccaacaacaa
cgtgataaagtaatgaaacgttaccgtgaccgtagtttacaattgttgatcgcaacagac
gtagccgctcgtggtattgatgtaagtgatgtaactcacgttattaacttctctttacct
gatgaaacagaaaactatacacaccgttcaggccgtacagcccgcgcaggtaaaactggt
atttcactttctttggtaaacgtaaaagagctaagcaaaatccgtcatcttgaaaagatc
atcggtaaaccttttgagaaaaaacaagtacctcaaggtgctgaagtttgcgaaaaacaa
ttattttctatcgttaaaaagattgaaaatgttgaagtaaacgacgaacaaatcagccca
ttcttgcctgcaattatggaaaatttggagtcactttcaaaagaagatatcatcaaaaga
ttcgcttctcttgagttcaaccgtttcttggattattacaaaaatgcacctgatttaaat
atcgaagcgcgtgacggtggtcgtgaagaccgcggtgatagacgtgatggtcgttcacgt
gaaggttcaaaaggctacacgcgtttatttatgaatttaggttcagtagatgaattctct
cgtggagatatgttgggcttcatctgtaacaatgcgaatatttcaggaaaatcaatcggt
aaaattgatttgaaaggcgtgttcacattcttcgaggttcaagatgcagaagtagaaaaa
gtattccaaggattccaaggtgtagattacaacggtcgtcaagtacgtatcgaagtatct
ggtgaagcaagaggtgaaggtcgtagcgaccgtggcggaagaagccgtggtggtgatcgt
ggcggaagacgtgaaggtggataccgtggtggtgatcgcggtggaagacgtgaaggtgga
tatggtggcggcgaacgcagcggaagacgtgaaggcggattcagtggtgagcgtcgtgat
cgtggtgaacgtagcagcaatggcggcggcttccgtgatttctctggaaaacgtaaagaa
tcaaaaagcaaatactaa
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