Sphingobacterium siyangense: JVX97_26340
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Entry
JVX97_26340 CDS
T08059
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ssiy
Sphingobacterium siyangense
Pathway
ssiy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssiy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JVX97_26340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssiy03019
]
JVX97_26340
03400 DNA repair and recombination proteins [BR:
ssiy03400
]
JVX97_26340
Enzymes [BR:
ssiy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JVX97_26340
Messenger RNA biogenesis [BR:
ssiy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JVX97_26340
DNA repair and recombination proteins [BR:
ssiy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JVX97_26340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
QRY57472
LinkDB
All DBs
Position
complement(6225332..6227233)
Genome browser
AA seq
633 aa
AA seq
DB search
MTQDSISILRQYWGFDSFRPLQEEIIQSVISGKDTLALLPTGGGKSICFQVPALMREGIC
IVVTPLIALMKDQVEHLRKNGIQAVAIYAGMRKREVDITLDNCVYGQIKFLYLSPERLYN
DIVRERIRFMNVNLFAIDEAHCISQWGYDFRPPYLELAKLRELHPKVPFLALTATATERV
ISDIQQKLNFPKENVFVKSFLRDNLAYMAIEEEDKMGRMVRIIHKLGGSGIVYVRNRRET
QEIARILVNNGISADYYHAGLTGQERDQKQQGWMTNVVRVIVATNAFGMGIDKPDVRFVI
HLDLPDSLEAYYQEAGRAGRDGKKAYPVILYQKADERKLVDNLQASFPDIPFIQQTYHYL
CNHFQIPYGSGEGVTVDFDVVAFAKKYQLPLVPVMNALKFLERDTWLVLSEAVTIPSRFK
FEIDSAELYKVQVQYVKYDKLIKAILRSYGGVFENYIHINEYEFARKLGLPYDRVVELLK
SLETLEIASYLPSTDAPQLTFLQNRVDYKHLHIDHIFIRDRHHVKEEEVNGMIGYIEHSN
CRSQSLLLYFGEKNAGFCEVCDLCLIRNHQEKQRANIKAEIKSSLLAEAKNIHDLVASLT
IGTEKKRIEIIRNLLDAEKIRLEDNLYSWNTLF
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaagatagtatatcaatcttaaggcaatattggggattcgattcatttagaccc
ctgcaggaagaaattattcaatcggtcatttcaggtaaagatacactggctttattgccg
actggcggcggaaagtcgatttgttttcaagtacctgccttgatgcgagaagggatttgt
attgtcgttacaccgcttatagcattgatgaaagatcaggttgagcatttgagaaaaaat
ggaattcaagcggtcgcgatttatgctggaatgcggaagagggaggtggatattacgttg
gacaattgcgtctatgggcagataaaatttctttatctttctcctgaaagattgtacaat
gatatcgtaagggagcgcatacgatttatgaatgtaaatctttttgcgatagacgaagca
cattgtatttctcaatgggggtatgatttcagacctccgtatttagaactcgctaagtta
cgggaactgcatcccaaggttccttttctagcccttacagcgacagcaactgagcgtgtc
attagtgatatacagcagaagctgaattttccaaaagaaaatgtatttgtcaaaagcttt
ctccgcgacaatttggcttatatggccattgaagaagaggataagatgggacgtatggtc
cgcatcatacacaagttgggtggatccggtattgtttatgtcagaaaccgacgggaaaca
caggagatagcccgtattttagtcaataatggcatttcggcagattattaccatgccggg
ctcacggggcaggaacgggatcagaaacagcaagggtggatgacaaatgttgttcgcgtt
attgtagctacaaatgcgtttgggatgggaattgataaacccgatgtacggtttgtcatt
catctcgatttgcccgattcgctggaggcctattatcaagaagccggtagggcaggaaga
gatggcaagaaggcctatcccgttattctttatcaaaaggcagatgagcggaaacttgtc
gataatttgcaagctagctttcctgatattccatttatccaacagacctatcattacctt
tgtaatcattttcagattccctatggttctggagaaggagtgactgtagattttgatgtt
gttgcatttgcaaaaaaatatcagctaccgttggttcctgttatgaatgcgctgaagttt
ctggagcgggacacttggttggttttgtcagaagctgttacaataccttcacgctttaag
tttgaaattgatagcgccgagttgtataaagttcaggtgcagtatgtcaaatatgataag
cttattaaggctattttgcgcagctatggtggtgtatttgaaaactatatccacatcaat
gaatatgaatttgcacgtaagttaggtctgccttatgatcgtgttgtcgagctgttgaag
tcgttggagacactggaaatagcgagctatctgccttctacagatgcgccacaattgacc
tttttgcagaaccgagtcgattacaaacatctgcatatcgatcatatttttattcgcgat
cgccatcacgtgaaggaagaggaagtcaatggcatgatcggttatattgaacatagcaat
tgccgcagtcaatcgctgttgttatattttggagagaaaaacgcggggttctgtgaagta
tgcgatttatgtctgatccgcaatcatcaggaaaagcagcgggcaaatataaaagcagaa
atcaaaagcagtttacttgctgaagccaaaaacattcatgatttggtggcgagtttgacg
ataggcacagaaaagaaaagaatagagatcatccgtaatctcctagatgccgaaaaaatc
cgcttggaggataatctctattcttggaataccttgttttaa
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