Streptococcus suis D12 (serotype 9): SSUD12_0120
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Entry
SSUD12_0120 CDS
T02021
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ssk
Streptococcus suis D12 (serotype 9)
Pathway
ssk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SSUD12_0120 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssk03021
]
SSUD12_0120 (rpoC)
03400 DNA repair and recombination proteins [BR:
ssk03400
]
SSUD12_0120 (rpoC)
Enzymes [BR:
ssk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SSUD12_0120 (rpoC)
Transcription machinery [BR:
ssk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SSUD12_0120 (rpoC)
DNA repair and recombination proteins [BR:
ssk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SSUD12_0120 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AER18467
UniProt:
G7SD56
LinkDB
All DBs
Position
119991..123638
Genome browser
AA seq
1215 aa
AA seq
DB search
MVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLKPERDGLFDEVIFGPTKDWEC
SCGKYKRIRYKGITCDRCGVEVTRAKVRRERMGHIELKAPISHIWYFKGIPSRMGLTLDM
SPRALEEVIYFAAYVVIDPKDTPLEHKSIMTEREYRERLREYGYGSFVAKMGAEAIQDLL
KQVDLPKEIAALKEELKTASGQKRIKAVRRLDVLDAFYKSGNKPEWMILNILPVIPPDLR
PMVQLDGGRFAASDLNELYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMREIVARDIAGNVKAAKRLIERGDDRIWDILEEVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARILMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEDAGREGEGMVFKDADEAVMAYRNGYVHLHTRVGI
ATDSLDKPWKDNQKHKVMMTTVGKILFNAIMPEGLPYLQEPNNANLTEGTPDKYFLEPGS
DIKAAIAELPINPPFKKKNLGNIIAEIFKRFRTTETSALLDRLKDLGYYHSTLAGLTVGI
ADIPVIDNKAEIIEESHERVEQIKKQFRRGMITDDERYAAVTDEWRSAKEKLEKRLVEKQ
DPKNPIVMMMDSGARGNISNFSQLAGMRGLMSAPNGRIMELPILSNFREGLSVLEMFFST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLDIRSITDGKEMIEPLE
ERLQGRYTKKTVKHPETGAVIIGPNQLITEDIAREIVNAGVEQVTIRSVFTCNTRHGVCR
HCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNSDITQGLPRVQEI
FEARNPKGEAVITEVKGEVIAIEEDASTRTKKVFVKGKTGEGEYVVPFTARMKVEVGDQV
ARGAALTEGSIQPKRLLEVRDVLAVETYLLSEVQKVYRSQGVEIGDKHIEVMVRQMLRKV
RVMDPGDTDLLMGTLMDITDFTDANAEVVIAGGIPATARPVLMGITKASLETNSFLSAAS
FQETTRVLTDAAIRGKRDNLLGLKENVIIGKIIPAGTGMARYRNLEPQAINEVEIIEDTV
AEELAAEAELEAVTE
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
gtggttgacgtaaatcgatttaaaagtatgcaaatcacgttagcttcaccaagtaaggtt
cgttcatggtcttacggtgaggttaaaaaacctgaaacaatcaactatcgtacactcaaa
ccagaacgtgatggactctttgacgaagtcatctttggtccaacaaaagactgggagtgt
tcatgtggtaaatacaagcgtatccgttataaagggattacttgtgaccgctgtggtgtt
gaagtgactcgtgcaaaagtacgtcgtgaacgtatgggacacattgagttgaaagcacca
atttcacacatttggtatttcaaaggtattccaagtcgtatgggcttgaccttggatatg
agcccacgtgccttggaagaagttatctacttcgcagcttacgtggtgatcgatccgaaa
gatacaccgcttgagcacaagtcaatcatgactgagcgcgaataccgtgagcgtttgcgt
gaatatggctatggttcattcgttgccaaaatgggtgcagaagcgatccaagacctcttg
aaacaagtcgatcttccaaaagaaatcgctgcgttgaaagaagaattgaaaacagcttct
ggtcaaaaacgcattaaagcagttcgtcgcttggatgtattggatgctttctataaatct
ggtaacaagcctgagtggatgattctcaatatccttccagttattccaccagatttgcgt
ccgatggttcagttggatggtggccgttttgccgcatctgacttgaacgaactctaccgc
cgtgttatcaaccgtaacaaccgtttggctcgtctcttggaacttaacgctccaggtatc
atcgtacaaaacgaaaaacggatgctccaagaagctgtggatgctttgattgacaacggt
cgccgtggtcgtccaatcactggaccaggtagccgtccacttaaatcactcagccacatg
cttaaaggtaagcaaggacgtttccgtcaaaacttgcttggtaagcgtgttgacttctca
ggacgttccgttatcgccgttggtccaactcttaaaatgtaccaatgtggtgtgccacgt
gaaatggcaatcgagctcttcaaaccgtttgttatgcgcgaaatcgttgcccgcgatatt
gctggtaacgtaaaagctgcaaaacgtttgattgaacgcggggatgatcgtatctgggat
atcttggaagaagtgattaaagaacacccagttcttttgaaccgcgcccctacccttcac
cgtttgggtatccaggcttttgagccagttctgattgacggtaaagcccttcgtttgcac
ccgcttgtctgtgaagcttacaacgccgacttcgacggtgaccagatggcgattcacgtt
ccattgtcagaagaagcacaagcagaagcacgtatccttatgcttgcggcagaacacatc
cttaaccctaaagatggtaaaccagtcgtaacaccatctcaggatatggttttgggtaac
tactacttgaccatggaagatgctggtcgtgaaggtgaaggtatggtcttcaaggatgcg
gatgaggctgttatggcttaccgcaatggctacgttcacttgcatacccgtgttggtatt
gcaacagatagccttgataaaccttggaaagacaaccaaaaacacaaggtcatgatgaca
actgtcggaaaaatcttgttcaacgcgattatgccagaaggccttccatacttgcaagag
ccaaacaatgctaacttgacagaaggaactcctgataaatacttcttggaaccaggatca
gatatcaaggctgccattgcagaattgccaattaacccaccattcaagaagaaaaatctt
ggtaacatcatcgctgaaatcttcaagcgtttccgtacaactgaaacatcagcccttctt
gaccgtttgaaagacttgggttactatcactcaacacttgctggtttgacagtgggtatt
gccgatatcccagttatcgacaacaaggctgaaatcattgaagaatctcacgaacgtgta
gaacaaatcaagaaacaattccgtcgtggtatgattactgacgatgagcgttatgcagct
gttacagatgaatggcgttcagctaaggaaaaattggaaaaacgcctggttgaaaaacaa
gatcctaagaacccaatcgttatgatgatggactctggtgcccgtggtaacatctccaac
ttctcccagttggccggtatgcgtggtctgatgtcagctccgaacggacgtatcatggaa
ttgccaatcttgtctaacttccgtgaaggtctttcggtattggaaatgttcttctccact
cacggtgcccgtaagggtatgacggatacggccttgaagacagccgactcaggttacttg
actcgtcgtttggttgacgttgcccaagacgttattatccgtgaagatgactgtggaaca
gaccgtggtcttgacatccgttcaatcacagatggcaaggaaatgatcgagccacttgaa
gagcgtttgcaaggtcgttacactaagaaaactgttaaacatcctgaaacgggtgccgtt
atcattggtccaaaccaattgattactgaagatattgcccgtgaaatcgtcaatgcaggt
gttgaacaagtaaccatccgtagcgtatttacatgtaacactcgtcacggtgtctgccgt
cattgttatggtatcaacttggcgacaggtgatgcggttgaagtgggtgaagcagttggt
acaatcgctgcccaatcgatcggtgagcctggtacacagcttacaatgcgtaccttccac
acgggtggtgtagcctcaaacagcgatattacgcagggtcttcctcgtgtccaagagatc
tttgaagcccgtaatccgaaaggggaagcggttatcactgaggttaaaggtgaagttatc
gctattgaagaagatgcttctactcgtaccaagaaagtctttgttaaaggtaaaactggc
gaaggcgaatatgtggttccatttacagctcgtatgaaggttgaagttggtgaccaagtc
gcgcgtggagcagcccttaccgaaggttctatccaaccaaaacgcttgcttgaagtccgt
gatgtcttggcggttgaaacttaccttctttctgaagttcaaaaagtttaccgtagccag
ggtgtagaaatcggcgacaagcacatcgaggtaatggttcgtcaaatgcttcgtaaagtt
cgtgtcatggatccaggtgatacagatcttctcatgggtaccctcatggatattaccgac
tttacagatgccaatgcggaagtggttattgcaggtggtattccggcaacagctcgtcca
gttcttatgggtatcacgaaggcttcccttgaaaccaactcattcttgtctgccgcatcc
ttccaagaaacaactcgcgttcttacagatgcagctattcgtggtaaacgtgacaacctt
ctcggtcttaaagagaacgttatcatcggtaagattatcccagcaggtacaggtatggcc
cgctaccgtaatcttgaaccacaagccatcaatgaagttgaaatcattgaagacacagta
gcagaagagcttgctgcagaagcagagcttgaagctgtaactgaataa
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integrated database retrieval system
