Sclerotinia sclerotiorum: SS1G_01540
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Entry
SS1G_01540 CDS
T01071
Name
(RefSeq) hypothetical protein
KO
K10756
replication factor C subunit 3/5
Organism
ssl
Sclerotinia sclerotiorum
Pathway
ssl03030
DNA replication
ssl03410
Base excision repair
ssl03420
Nucleotide excision repair
ssl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SS1G_01540
03410 Base excision repair
SS1G_01540
03420 Nucleotide excision repair
SS1G_01540
03430 Mismatch repair
SS1G_01540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssl03032
]
SS1G_01540
03036 Chromosome and associated proteins [BR:
ssl03036
]
SS1G_01540
03400 DNA repair and recombination proteins [BR:
ssl03400
]
SS1G_01540
DNA replication proteins [BR:
ssl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
SS1G_01540
DNA Replication Termination Factors
ELG1-RFC complex
SS1G_01540
Chromosome and associated proteins [BR:
ssl03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
SS1G_01540
DNA repair and recombination proteins [BR:
ssl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
SS1G_01540
Check point factors
HRAD17(Rad24)-RFC complex
SS1G_01540
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
AAA_assoc_2
RCF1-5-like_lid
AAA_22
AAA_11
AAA_30
AAA_16
AAA_24
AAA_5
RuvB_N
AAA_3
AAA_19
DUF815
ResIII
AAA_28
AAA_7
AAA_14
SLFN-g3_helicase
DNAX_ATPase_lid
Mg_chelatase
VTC
DEAD
ABC_tran
Viral_helicase1
AAA_2
AAA_18
RNA_helicase
ATPase_2
Motif
Other DBs
NCBI-GeneID:
5493259
NCBI-ProteinID:
XP_001597346
UniProt:
A0A1D9PTL5
A7E8B2
LinkDB
All DBs
Position
Unknown
AA seq
390 aa
AA seq
DB search
MSDYEDDMDIDAPPVGDSIMFNSDNTNSKGKRSAANLPVEAEDSLPWVEKYRPDTLEDVS
GHQDILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARRIYGPKNMRQMVLELNASDD
RGIEVVREQIKTFASTKQIFSMNSATVSPGAYKLIILDEADAMTSTAQMALRRVMEKYTA
NTRFCVIANYTHKLSPALLSRCTRFRFSPLKESDIRVLVDKVIMEENVQINAEATDALVR
LSKGDMRRALNVLQACHASSTPIHIKGTPKMEEKDIVRDLITETTIYDCIASPHPADISK
IMNTILKTSDVKSCLQMINAIKSTQGLALADIITALSEELIKVDVPASVMITWLQGLAEV
EYRLSGGGSEVIQTGAVVGVVRQGAELMNN
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgtccgactacgaagatgatatggatattgatgctcctcctgtgggagattcaataatg
ttcaattccgataatacgaattcgaaaggcaaacgaagcgcagcaaatttacctgttgag
gcagaggatagtcttccatgggtcgagaaataccgaccagatactttagaagatgtttct
ggtcatcaggatattcttgctactataaataaattcgtcgacacaaatagacttccgcat
cttctattctacggtcccccgggaactggtaaaacctccaccatcctcgcccttgcacgt
cgcatatatgggcccaaaaacatgcgacaaatggtcctcgagctcaatgcctccgatgac
cgcggtatcgaagttgtgcgcgaacaaatcaaaacctttgcctccaccaaacagatattc
tccatgaattctgccaccgtgtctcctggagcatataaacttattattcttgatgaggcg
gatgcgatgacttctactgcgcagatggctttaagacgagtgatggagaaatatacggcg
aatacacgattttgtgttattgctaattatacacataaattgagtccggctttgttgagt
agatgtacgagatttaggttcagtccgttgaaggagagtgatattagagtgttggttgat
aaggttattatggaagagaatgtgcagattaatgcagaggctacagatgctttagttagg
ttaagtaaaggagatatgaggcgggcgttgaatgtattacaggcttgtcatgccagcagt
acaccaatccacatcaaaggcacacccaagatggaagagaaagacattgtccgagatctc
atcaccgaaaccactatatatgattgtatcgcctcacctcatccagccgatatatcgaag
atcatgaacacgattctcaaaacctcagatgtgaaatcatgtttacaaatgatcaatgcc
attaaatctacacaaggtcttgcattagcagatatcataacggctctctcggaagaactc
ataaaagtggatgttccagcatctgttatgattacatggcttcaaggattagcagaagtg
gaatataggttgagtggtggtggaagtgaagttatacagacgggagcagtggttggtgtt
gtgaggcagggagcagaacttatgaataattaa
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integrated database retrieval system
