Sclerotinia sclerotiorum: SS1G_01887
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Entry
SS1G_01887 CDS
T01071
Name
(RefSeq) hypothetical protein
KO
K14327
regulator of nonsense transcripts 2
Organism
ssl
Sclerotinia sclerotiorum
Pathway
ssl03013
Nucleocytoplasmic transport
ssl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
SS1G_01887
03015 mRNA surveillance pathway
SS1G_01887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssl03019
]
SS1G_01887
Messenger RNA biogenesis [BR:
ssl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
SS1G_01887
mRNA cycle factors
P-body specific factors
SS1G_01887
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
5494122
NCBI-ProteinID:
XP_001597691
UniProt:
A7E9A7
LinkDB
All DBs
Position
Unknown
AA seq
1245 aa
AA seq
DB search
MDRKRKHVYAVNKSLDSSLKKNTAFIKRLRTAISAATLSTFLQEIRTLSLHKYLSEIISA
CYEGLCRLKSPGEVEAGVEIVSALHQRFGPAEFTEFLGWLVGKGLATPEKSLLKSLAAEA
REKEEKERIVRQRVLLRVVTELWLVGVLRTLDDVARPDDASHGKESISGPSSKAPDNKAK
PNGVGKGGGAEPFPLEVLKDLLGHDRDHANLPLLVIFVKAFGWDILGVREAGYEGRKTVE
EDGATKTTNNATDGEDGEGEDENGDTSVEEALLVLDSAEDTPLASPELQERFRNILNRYF
EDVKAHLIRDQKAIGKQARKDSEAYVKSGQVFEDRQANYEKAVKAQERLISNAQVLAESI
GAEMPDLKDADDPSALGNGGVGLVKTGDYLRGEGEGAGIWEDEDERRFYENLVDLKGKVP
GMLLEDGKKKKPDTDEQVGKKIDTSEIASAESTATRPTDDDQSTAIANKTIGAQVDALLA
RLPDLINKDMIDEAAIDFCFLNSKASRNRLIKAVQEVPKGRSDLLPSYSRLVATLGKYMP
DITKGLVDYLDQEFRSLQRRKEKEFLGQARLGNIRYLAELTKFGVVPEHVIFHCLKVSLD
DFSRMNIEIICNLLENCGRYLLRNPEMSPRMTSFLETLKRKKSVQHIGQQERMLIENAVY
YVDPPLRAAIQQKERTPTDLFIRKLVYSDMTTRNYARIIKSIRRLHWEESEVVTILEKVL
SKPGKVKYGNIYLLAIVTGALFRYHQSFVVTVIDNVLEYIIVGLEQNDFKFNQRRIAEVK
YLGELYNFRMVDHPVIFDTMYRILTFGHGGPPIPGRVNPFDMPDDFFRIRLVATLLETCG
VFFSRGAAGKKLDYFLSFFQYYIYTKDPLPMDIEFIVSDIYAATRPQWKLASNIEEASRA
FQLAMAQDQKTAGIEKVVEPEEPDSDASSDEGDAGIPEGDADDASSDSEEELEIDANADS
LTSPTGNESEEENFSVTRQEEEIDPEDEADFEREYAKMMAESLDSRKFERKATFDVPLPM
RRKDRETTNSNELPKESSSANSPSGGTMAFSLLTKRGNRQQTRTVALPSDSNFAIAMKSQ
QAAEREEQQRIKNLVLNYDLNGGDEQDGDSTLQPLLPNPNIHTFNPGFDKSATTTFSRSD
KSGSNRSGQRSRKLQLSDVDWYDPLKEPSQFHTPRKTQRDENSKCQNLDKLDAEVVSVST
PERKVSRLYPTLAAESRSKGKGFAAKEEDQPTVNSPSTSEKFRVR
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcaagagaaagcacgtttatgcagtcaacaagtcattagattcatcactcaag
aagaatacagccttcatcaagcgccttcgaaccgcaatttcagctgcgacccttagcacc
ttcctacaagagattcgtaccctgagccttcacaaatatctctcggaaattatatcagct
tgttatgaagggctttgcagacttaagtctcctggggaggtcgaggccggcgtagaaatt
gtcagcgcattacaccagcgttttggcccagcagaatttacagaatttctaggatggttg
gtaggaaaaggattggctacgccagaaaagtcattgttgaagagtctcgcagccgaggcc
cgagaaaaggaagaaaaggagagaattgtacgacagagagtactgttgagggttgtcacc
gagttgtggctcgtgggagttttgagaactctagatgatgtcgctcgaccggatgatgca
tcccacggcaaggaatcaatttcaggaccatcaagtaaggcaccagataataaggcaaaa
ccaaacggagtcggaaagggtggaggcgctgaaccatttcctctggaagttctgaaggat
cttctgggacatgatagagatcatgcgaacttgcccttactggttatctttgtgaaggca
tttggctgggatatactgggtgtcagagaagccggatacgagggcaggaaaacggttgaa
gaagacggtgctacgaagacgacgaataatgccactgatggtgaggatggtgagggcgag
gacgaaaatggagatacttctgtggaagaagcgctactggtcttggactccgccgaagat
acccctcttgcctcacccgaactacaggagcgctttcgaaatatccttaatcgctatttt
gaagatgtcaaagcacacctcatccgtgatcagaaggccattggtaaacaggctcgcaaa
gattcggaggcatacgtcaagtctggtcaagtgttcgaagatcgccaggcaaattatgaa
aaggcagtcaaggcgcaagaacgacttatatcgaatgcccaagtcctcgcagaatccatc
ggtgcagaaatgccagatctcaaagacgctgatgatccttcggccctaggaaatggaggt
gttggtttagtcaagactggtgattacttgagaggcgagggcgagggcgcaggtatttgg
gaggacgaagatgagcggagattctacgaaaatctggtagatctcaaaggcaaggtccca
ggtatgctcctcgaagatggcaaaaagaaaaaaccggatacagatgagcaagttggtaaa
aagatcgatacatcggaaatagcttccgcagagtccacagcaacgaggccaaccgatgat
gaccaatctacagccattgccaacaaaaccattggtgcccaggtcgatgcattacttgct
cggctccctgaccttataaacaaagacatgattgacgaggctgctattgacttttgtttc
ttgaactccaaggcttctcgtaaccgtttgatcaaagctgtacaagaggttcccaagggc
cgtagtgatcttcttccatcatactcaagactagtagccacactcggaaagtacatgcca
gatattaccaagggtttggtcgactacctcgatcaagaatttcgtagtcttcaacgccgc
aaggagaaggaattccttggccaagcccggctaggaaatatccgctatctagctgagctg
accaaatttggagtggttcctgaacatgttatattccattgcttgaaagtcagtcttgac
gacttctcacggatgaatattgagattatatgtaatctgcttgaaaattgtggtcgatac
ttacttcgcaatccggaaatgtcccctcgaatgacatcttttttggaaacactcaaacgc
aagaaatcggtacagcatattggccaacaggagcgcatgctaatcgaaaatgccgtttac
tatgtagacccacctttaagagccgcgatccagcaaaaggagagaactcccactgatttg
ttcatccgcaaacttgtctactctgatatgactacacgcaactatgctagaatcatcaag
tcaattcggaggcttcactgggaagaatcagaggttgtcaccatccttgaaaaggtactc
tccaaacctgggaaagtaaagtacggtaacatctatctattggcaattgtcacaggcgcc
ctatttcggtatcaccaaagttttgtagttacagtcatcgacaacgtcttggagtacatt
attgttggtttagagcaaaatgatttcaagttcaatcaacgtcggattgcagaagtcaag
tacctcggggaactgtacaattttcgtatggttgatcatcctgtaatatttgatacaatg
taccgtattttgactttcggtcacggtggaccccctatccctggccgcgttaatccattc
gatatgcccgatgactttttcaggattcgtcttgtagcaactttattagagacttgcggt
gttttctttagtcgtggtgcggcgggaaagaagcttgattacttcttgtctttttttcag
tactacatctatacgaaagatcctttgcccatggacattgaatttatcgtcagtgatatt
tatgctgccacgagacctcaatggaagcttgcctcgaatatagaggaagccagtcgtgct
tttcaattagctatggctcaagatcaaaagactgctggcatcgagaaggttgttgaaccg
gaagagccagatagtgacgcatcatcggatgagggagatgcaggtattccagaaggagat
gctgatgatgcttcctctgattctgaagaagagctagagattgacgccaatgccgacagt
ctaacatccccaacaggaaacgaatcagaagaagaaaattttagtgtcactcgccaggaa
gaggaaatcgatcctgaagatgaagctgacttcgagcgtgagtatgctaaaatgatggct
gagagtctagactccagaaaatttgaacgaaaagcaacatttgatgttccccttcccatg
agacgcaaagatcgcgaaaccacaaattcaaacgagttgcccaaggagtcttcttcagca
aatagcccctctggaggtacaatggcattctcgctcttgacaaagcgtggtaatcgccaa
cagactcgtacagttgccctgccttcagactcaaatttcgcaattgctatgaaatcacaa
caagctgccgagcgtgaggaacaacaacgcatcaagaatctggtcctaaactatgacctc
aatggtggtgacgaacaagatggtgactctacactgcaacccttactccctaaccccaat
attcacactttcaatccaggtttcgataaaagtgccactacaacgttctccagatctgat
aaatctggtagtaaccgtagtgggcaaaggtcaagaaagttacagcttagtgacgttgat
tggtatgaccccctaaaagagccctctcaatttcacactccaagaaagacccaaagagat
gagaacagtaaatgccaaaaccttgacaaattggatgccgaggttgtttcagtgtcaacg
cccgaaagaaaagtttcaaggctgtatccaaccctcgctgccgaaagtaggtcgaaaggc
aaaggtttcgctgcaaaggaagaagatcagccaacggtaaattcgccaagtacttccgaa
aagttccgtgtgagataa
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