Sclerotinia sclerotiorum: SS1G_03208
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Entry
SS1G_03208 CDS
T01071
Name
(RefSeq) conserved hypothetical protein
KO
K12856
pre-mRNA-processing factor 8
Organism
ssl
Sclerotinia sclerotiorum
Pathway
ssl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SS1G_03208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssl03041
]
SS1G_03208
Spliceosome [BR:
ssl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
SS1G_03208
Complex C
U5 SnRNP specific factors
SS1G_03208
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRO8NT
U5_2-snRNA_bdg
RRM_4
U6-snRNA_bdg
Motif
Other DBs
NCBI-GeneID:
5491635
NCBI-ProteinID:
XP_001595120
UniProt:
A7ED19
LinkDB
All DBs
Position
Unknown
AA seq
1546 aa
AA seq
DB search
MSSIPPPPPPGWSSSAPPSMPLGAPPGAPPPPGYRPPADPHVAKFAQKKKDWLRSQRNRF
GEKRKGGFVETQKADMPPEHLRKIVKDIGDVSQKKFSSDKRSYLGALKFMPHAVMKLLEN
MPMPWESAREVKVLYHVNGCLTLVNEIPRVIEPVFHAQWATMWICMRREKSDRRHFKRMR
FPPFDDEEPPLSWSENIEDVEPLEPIQLELDEGEDGAVFEWFYENRPLLDTPHINGPSYK
EWNLTLPQMATLYRLSRPLLSDLVDKNYFHMFELKSFQTAKALNVAIPGGPRFEPLYKDV
DPNDEDFGEFNAIDRIIFRAPIRTEYRVAYPYLYNSLPRSVKLSWFSHPQVVYVRAEDPS
LPAFYFDPVINPISSRSVAPKNITISHEDEIFGPGNNEEPEEDAFRLPGGAEPFLADEEL
YTSETASAISLWWAPFPFNRRSGRMVRAQDVPLVKQWYLEHCPQGQPVKVRVSYQKLLKT
YVLNELHKRKPKAQSKQSLMKSLKQTKFFQQTTIDWVEAGLQVCRQGFNMLNLLIHRKNL
TYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLMREILKMTKLIVDAQVQYRLGNIDAFQ
LADGILYAFNHVGQLTGMYRYKYKLMHQIRSCKDLKHLIYYRFNSGPVGKGPGCGFWAPA
WRVWLFFMRGIIPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHFDLELRASVMADL
LDMMPEGIKQNKVQTVLQHLSEAWRCWKSNIPWKVPGLPAPIENIILRYVKSKADWWISV
AHYNRERIRRGATVDKTVAKKNLGRLTRLWLKAEQERQHNYMKDGPYVSSEEAVAIYTTT
VHWLESRKFSPIPFPSVSYKHDTKILILALERLREAYSVKGRLNQSQREELALIEQAYDS
PGTTLERIKRFLLTQRAFKEVGIDMNDNYSTINPVYDIEPVEKISDAYLDQYLWYQADQR
HLFPAWIKPSDSEVPPLLTYKWAQGINNLDKVWETADGECNVMIETQLSKVYEKIDLTLL
NRLLRLIMDHNLADYISSKNNVQLTYKDMNHVNSYGMIRGLQFSAFVFQYYGLVLDLLLL
GLQRASEIAGPPAGPNDFLQFRDRETETRHPIRLYTRYIDRIWVFFRFTADESRDLIQRF
LTEQPDPNFENVIGYKNKKCWPRDSRMRLMRHDVNLGRAVFWDLKNRLPRSVTTIEWDDT
FSSVYSRDNPNLLFSMCGFEVRILPKIRNQNDEFPVKDSVWSLVDNTSKERTAHAFLQVT
EEDIAKFNNRIRQILMSSGSTTFTKIANKWNTTLIALFTYYREAAVSTVNLLDTIVKCET
KIQTRVKIGLNSKMPSRFPPAVFYTPKELGGLGMISGSHILIPTSDKRWSKQTDVGVTHY
RAGMSHDEDTLIPNIFRYIIPWEAEFIDSQRVWTEYSQKRQEANQQNRRLTLEDLEDSWD
RGLPRINTLFQKDRSTLSFDKGFRARTEFKTYQLMKSNPFWWTSQRHDGKLWNLNAYRTD
VIQALGGVETILEHTLFKATAFPSWEGLFWEKASGFEERVDPCPQV
NT seq
4641 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaataccaccacctccaccgcctggatggagctcttcggcgcctccatcaatg
cctctgggcgcgccacccggtgctcctcctcctccaggttatcgaccaccagcggatcca
catgttgcgaagtttgcgcagaagaagaaggactggttacgatctcagcgaaatcgattc
ggcgaaaaacgaaaaggtggcttcgtagaaactcagaaggctgacatgcccccagagcat
ctgcgaaagatcgttaaggacattggagatgtatcacaaaagaaattcagcagcgacaaa
cgaagttatctcggtgcactcaagtttatgccacatgccgtcatgaaattgttggagaac
atgccaatgccttgggagtctgcgagggaggtaaaggtgctgtaccatgtcaatggttgc
ctgactttggttaatgagattccacgagttatagaaccagtgttccacgcacaatgggct
acgatgtggatttgtatgagaagagagaagagtgacagaagacatttcaagaggatgaga
ttcccgccattcgacgacgaagagccgcccctatcatggtcggagaacattgaagacgtc
gagccattggagccaattcaactggaacttgatgagggggaagacggcgctgtttttgaa
tggttttacgagaatcgaccacttcttgatactccacatatcaacggcccgagttacaag
gaatggaaccttacgttacctcaaatggcaactttatatcgattgagtcggccattatta
agtgatttggttgacaagaactactttcacatgttcgagctgaaaagcttccagaccgcc
aaagctttgaatgttgcgattcctggtggtcctcgattcgaacctttatataaagatgtg
gatcctaatgatgaagattttggagagttcaatgctattgatcgcatcatcttccgagct
ccaattaggacagaatatcgtgtagcatatccctacctttataattcactgcctcgcagc
gttaagctttcctggttctcgcatccgcaagtggtatacgttcgtgccgaggatccaagt
ttaccagcattttatttcgatcccgtcatcaacccaatctcttcaagatccgtcgcccct
aaaaatatcactatcagtcacgaagacgagatattcggacccggaaataatgaagagcca
gaagaagacgctttcagattaccaggtggtgccgagccatttctagcagatgaggagttg
tacacaagcgagaccgcttcagcaatctctttgtggtgggcaccatttccgtttaatcga
agatctggtcgcatggttcgggcacaagacgtacctctagtaaaacaatggtaccttgag
cattgccctcagggtcaaccagtaaaggtccgagtttcatatcagaagcttctgaagact
tatgtcttgaacgagctgcataagcgcaagccgaaagcacagagtaaacagagcttgatg
aagtcgttgaagcaaacgaaattcttccagcaaacaacaattgattgggttgaagctgga
cttcaagtctgcaggcagggtttcaatatgctaaatcttctgattcaccgcaagaacctc
acatacctacatcttgattataatttcaatttaaagcctgttaagacattgacaacaaag
gagagaaagaagtctcgattcggcaatgcattccatctcatgcgagagatcttgaagatg
accaagctcatcgttgacgcacaagttcagtatcgcctcggcaatatcgatgcttttcaa
ctcgcggatggtattctatatgctttcaatcatgttggtcagctgactggaatgtatcgt
tacaagtacaagctgatgcatcagattcgctcatgtaaagatctgaagcatttaatatat
tatcgattcaattctggacccgtaggtaaaggacctggttgtggtttctgggcacctgct
tggagagtttggctctttttcatgcgtggtataattccattacttgaaagatggcttgga
aacctcctctctaggcagtttgaaggacgtcatagcaaaggtgttgcaaagacagtcacg
aaacaacgtgttgagtcgcactttgatcttgagttgcgagcatcggtcatggccgatctt
cttgatatgatgccggagggtatcaagcaaaacaaggttcaaacggtacttcaacatctt
tcagaggcatggagatgctggaagagtaatatcccttggaaggttccaggtttaccggca
cccatcgagaatatcattcttcgttatgtgaagagcaaggcagattggtggatttctgtc
gctcactacaatcgtgagcgtatccgtagaggagcgactgtggacaaaaccgttgcaaag
aagaatcttggtcgtcttacaagactttggctcaaggctgaacaagagaggcagcataac
tatatgaaagacggtccatacgtgtcatccgaagaagctgtcgccatctatacaaccact
gtccattggctggagtcacgaaaattctcaccaattccattccccagtgtttcctacaag
cacgataccaaaatcctcattcttgctttggaacgtcttcgtgaagcatattctgtgaag
ggacgattgaaccaaagtcagcgtgaggaactggccttgattgagcaggcttatgacagt
cctggaaccactttggagagaatcaagcgcttcctactgacacagagagcttttaaagaa
gtaggaatcgatatgaacgacaattatagcacaatcaaccctgtatatgatatcgagcct
gtggaaaagattagtgatgcctatcttgaccaatacctctggtatcaagctgaccagcgc
caccttttccctgcctggatcaagccttccgattccgaggtcccgcccttactgacctat
aaatgggctcaaggtattaataacctcgacaaagtatgggagaccgcagatggagagtgt
aatgttatgattgaaacacaattatccaaggtatacgagaagatcgatttaactcttctt
aatcgtttgcttcgacttatcatggaccacaatctggctgattacatatcgtccaaaaat
aacgttcaattgacctacaaagatatgaatcacgtcaacagttacggaatgatcagaggt
cttcaattctcggccttcgttttccagtactatggacttgttctcgacctcttgcttctg
ggcctccaacgcgctagtgaaattgctggaccaccagcaggtcctaacgatttcctccaa
ttccgcgatcgggagacggaaacaagacatccaatccgtctatacacaagatatattgat
cgtatctgggtatttttccgctttacggccgatgaatcgcgcgatcttatccagcgcttc
cttacagaacaacctgatcctaattttgaaaatgtcatcggctacaaaaacaagaaatgc
tggccaagagattctagaatgcgtctcatgagacacgacgtcaatcttggccgtgctgtt
ttctgggacttgaagaaccgcttaccaagatctgttaccacgatcgaatgggatgatacc
ttttcaagcgtatacagccgagacaacccgaatttacttttctccatgtgcggtttcgaa
gtacgaattctccctaaaattcgtaaccagaatgacgaatttcctgttaaggacagcgta
tggtccttggtcgataacaccagcaaggagagaacggcacatgcattcttgcaggtcaca
gaggaagatatcgcgaaattcaataatcgcattcgtcaaattttgatgtcatctgggtca
accacattcacaaagattgctaataaatggaatacaaccttgatcgccctcttcacatat
tatcgtgaagcagctgtatcaacggtcaacttgctggataccattgtgaaatgtgagacg
aagattcagaccagagttaagattggtcttaattctaagatgccttctcgtttccctcct
gctgttttctatacaccaaaggaacttggtggtcttggtatgatttccggatcacatatc
ctcattcctacgagtgacaaaagatggtccaagcagacagacgttggtgttacccattat
cgtgcaggaatgagccatgatgaggacactcttatccctaacattttcagatacatcata
ccatgggaagctgaatttatcgactcccagcgtgtgtggactgaatattctcagaaacgt
caggaggcgaatcagcaaaatcgaaggttgacacttgaggatcttgaagatagttgggat
cgtggattacctcgtatcaatacacttttccagaaagatagaagcaccttgagttttgat
aaaggattccgcgcacgtactgagttcaagacataccaacttatgaagagtaatccattt
tggtggactagtcaacgtcacgatggtaaattgtggaaccttaatgcctatcgtaccgat
gttatccaagcacttggtggtgttgaaaccattcttgaacatacactcttcaaggcgaca
gcatttccatcctgggaaggtctcttttgggaaaaagcaagtggatttgaagagcgagta
gacccttgcccccaagtttga
DBGET
integrated database retrieval system
