Sclerotinia sclerotiorum: SS1G_03256
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Entry
SS1G_03256 CDS
T01071
Name
(RefSeq) hypothetical protein
KO
K07573
exosome complex component CSL4
Organism
ssl
Sclerotinia sclerotiorum
Pathway
ssl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SS1G_03256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssl03019
]
SS1G_03256
Messenger RNA biogenesis [BR:
ssl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
SS1G_03256
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
SS1G_03256
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
S1_RRP4
Beta-barrel_RND_2
S1_RRP5
AAA_8
Motif
Other DBs
NCBI-GeneID:
5491793
NCBI-ProteinID:
XP_001595167
UniProt:
A0A1D9Q817
A7ED66
LinkDB
All DBs
Position
Unknown
AA seq
211 aa
AA seq
DB search
MAMSQIPLVAVPGQLLGSSSEYLPGPGTHIHSSNLYASILGPIKTVAPPKPSYPQKRATK
ITPAALVPLSTVSIERATVTGDKAEIIPEVNSTVLCRVTRITPRQATVAILVVGETVLEG
EWQGLIRVQDVRATEKDKVKIFESFRPGDIVRAVVISLGDQSNYYLSTARNELGVIMATS
EAGNAMYPVSWKEYKDPETGSSESRKVAKPF
NT seq
636 nt
NT seq
+upstream
nt +downstream
nt
atggcaatgtcacaaatcccactcgtagccgttccaggccagctgctcggttccagtagt
gaatatcttccaggtccaggtacacacatccattcctcgaatctctatgcctccatcctc
ggacccatcaaaaccgtagcaccgcccaaacctagctatccgcaaaaacgagccacgaag
attacgcctgcggcacttgtacctctctctaccgtctccattgaaagagctacggttacg
ggagacaaggcggaaattatacctgaggtgaatagcacggttttatgccgagttacgaga
atcactccgcgacaagcgacagtggcgatattggttgtaggagagacggttttggagggg
gaatggcagggtctgattagagtgcaggatgtcagggctacggagaaggataaggttaag
atttttgagagttttagaccgggggatattgtgagggctgttgtgatttcattgggtgat
cagtcaaattactacctcagtacggcgagaaatgagttgggcgttattatggcaacaagt
gaggcgggtaatgcgatgtacccggttagttggaaggaatataaagatccggaaacggga
tcaagtgagagtagaaaggttgcgaaaccgttttag
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