Sclerotinia sclerotiorum: SS1G_03952
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Entry
SS1G_03952 CDS
T01071
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ssl
Sclerotinia sclerotiorum
Pathway
ssl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SS1G_03952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssl03019
]
SS1G_03952
03041 Spliceosome [BR:
ssl03041
]
SS1G_03952
03009 Ribosome biogenesis [BR:
ssl03009
]
SS1G_03952
03016 Transfer RNA biogenesis [BR:
ssl03016
]
SS1G_03952
Enzymes [BR:
ssl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SS1G_03952
Messenger RNA biogenesis [BR:
ssl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
SS1G_03952
Spliceosome [BR:
ssl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
SS1G_03952
Complex C
U4/U6.U5 tri-SnRNP related factors
SS1G_03952
Ribosome biogenesis [BR:
ssl03009
]
Eukaryotic type
Pre-60S particles
Helicases
SS1G_03952
Transfer RNA biogenesis [BR:
ssl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
SS1G_03952
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
5492087
NCBI-ProteinID:
XP_001595862
UniProt:
A0A1D9QBY0
A7EF61
LinkDB
All DBs
Position
Unknown
AA seq
1082 aa
AA seq
DB search
MDDLFDAFEDKPQTAAPSRPKKAKKDKKDRSKKRNANGDVKPISDAQDGDSEMVDAEEPV
VEADAEEEDIEEVDEISEAKDAKRRRKETESEPVVTDTFETAQSRELAASAGLQGAPEEK
ALVLQHNIQHQVSLPPDYDYIPISQHKAPAEPARTWPFELDPFQKVAIASIQRNESVLVS
AHTSAGKTVTAEYAIAQCLKNNQRVIYTSPIKALSNQKYREFTADFGDVGLMTGDVTINP
TATCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKARGVVWEETIILLPDKVRYV
FLSATIPNAMQFAEWITKTHNQPCHIVYTDFRPTPLQHYFFPAGADGIHLIVDEKGNFRE
DNFSKAMATIEEKKGSDPADINAKQKGRGKDKKTNKGANKEGSDIYKIVRMIMLKHYNPV
IVFSFSKRECEAYALQMSSMAFNDQSEKDMVSKVFESAIESLSEEDRTLPQIQHILPLLR
RGIGVHHSGLLPILKETIEILFQENLIKVLFATETFSIGLNMPAKTVVFTSVEKFDGEKM
RYLTPSEFVQMSGRAGRRGLDDRGIVIMMINDKMEPESAKTIVRGEQDKLNSAFYLGYNM
ILNLMRLEGISPEFMLEHCFYQFQNTSSVTGLEKELQDLQVARDDVQIPDEATIKDYYDL
RQQLTTYTKDMRDVINHPNYCLQFMQPGRVVHIKYQNHDFGWGAVVKFTPRRPAKGSSVE
YAPQQSYILDVLLLVSSDSIVGTQTQNDLPLGITPPGEGDKGKMEVVPVLLSCVEAIGHV
RIFLPKDLHPANERNQIRKSLDEVKRRFPDGIAVLDPIENMGITDDSFKRLLRKIEVLES
RLLSNPLHNSPRLPDLYNQYAGKLDITKQIKEKRKAITAALSIMQLDELKSRKRVLRRLG
FINEQEVVELKARVACEISSTGDGHELLLSELLFNGYFNDLTPEMCAAVLSVFIFEEKSQ
CPPLKEELAAKYREIQAQARIIAKVTAESKLKMNEEEYVTSFKWQLMEVVYVWAQGKSFA
EICKMTDVYEGSLIRLFRRLEELLRQMAQAGKVMGSDEVSNKFDESLKKIRRDIVAAQSL
YL
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atggatgacttatttgacgctttcgaggataaaccacagacggctgctcctagcagaccc
aaaaaggcaaagaaagacaagaaagatcgcagcaagaaaagaaatgcgaatggtgatgtg
aagccaatttctgatgcgcaggatggcgattccgagatggttgatgctgaggaacctgtg
gtagaagcagatgcagaggaagaggatattgaagaagtggacgagattagtgaagcgaag
gacgcaaaacgacgcagaaaggaaacagaatccgaaccagtggttacggataccttcgag
acagcacaatcgcgagaattggctgcttctgcaggattacagggcgccccagaagaaaag
gcattggtactacagcacaacattcaacatcaagtttctttacctccagattacgattac
attccgatatcacagcacaaggcccccgctgaacctgctagaacttggcctttcgaattg
gatcctttccaaaaggttgccattgcatcaattcagagaaatgagagtgtgctggtatcg
gcgcataccagtgcgggaaaaactgttacagcagaatatgcgatcgcgcaatgcctcaag
aataatcagagagtcatttacacaagtcccattaaagctttgagtaatcagaaatatcga
gaatttactgcggattttggagatgttggtttaatgactggtgatgttacaatcaaccca
accgcgacctgtctggttatgacaacagaaattctacgatctatgttataccgaggatct
gagattatgagagaagttgcctgggttgtctttgatgaaattcattacatgagagacaaa
gccagaggtgtggtttgggaagagactatcatcttattaccggataaggtcagatatgtc
ttcttgtctgcaactattccgaatgctatgcaatttgctgaatggatcacaaaaactcat
aatcaaccatgtcacattgtttacacggatttccgacctacccccttacagcactatttc
ttcccagctggtgcagatggtatacatttgattgttgatgagaagggaaacttcagagaa
gataacttttcaaaggccatggcaacaattgaggagaaaaaagggtctgatccagcagat
atcaacgcaaagcaaaaggggcgtggtaaagataagaagaccaacaagggtgccaataaa
gagggatcggatatttataagattgttcgaatgatcatgttgaagcactacaatcctgtt
attgttttcagtttcagtaagagagagtgcgaggcatatgcattgcaaatgagctccatg
gcttttaacgaccaatcggaaaaggacatggtttcgaaagtcttcgagagtgcaattgag
tctttatcagaagaagataggacactaccacaaatccagcacatcttgccattgttgaga
cgtggtattggtgtgcatcattctggacttcttcctatcctcaaggaaactatcgaaatt
ttgttccaggagaatttgatcaaggttctttttgctacagagactttctctattggtttg
aatatgcctgccaagactgtcgtcttcactagcgttgagaagtttgatggtgagaagatg
cgatatttgacaccatctgaattcgtacaaatgtctggtcgtgctggtcgtcgtggtctt
gatgatagaggtattgttatcatgatgataaatgacaagatggagccagagagtgctaag
acaattgtacgaggagagcaggacaagctcaattcagctttctacctcggttataacatg
attcttaacttgatgcgtttggagggaatttcaccggaatttatgctagaacattgtttt
taccagttccagaacacttcaagtgtcactggtcttgaaaaggaacttcaagatttgcaa
gttgcaagagatgatgttcaaattccagatgaagcaaccattaaagattactacgatctt
cgacaacagcttactacatacaccaaggatatgcgcgatgtcatcaaccaccctaactat
tgtctgcagttcatgcaaccaggacgagttgttcatatcaaataccaaaatcatgatttt
ggttggggagcagttgtcaaatttacaccacgacgacctgccaagggatcttcggtagaa
tacgccccacaacaatcatacatcctcgatgtgcttttgttagtttcttcagacagtatc
gttggcacacaaacacaaaatgacttgccattgggtattacaccaccgggtgagggcgat
aagggcaagatggaagttgttccagtacttctgtcatgcgttgaagctattggacatgtt
cgtatctttcttccaaaggaccttcatccagccaatgaacgaaatcaaattcgtaaatct
ctcgacgaagtcaaacgccgtttcccagatggtatcgcggtcctcgatcctatcgaaaac
atgggtatcacagatgattcattcaagagacttcttcgcaaaattgaagttcttgaatcc
cgtctactctcaaaccccctccacaattctccccgtctcccagatctctacaaccaatat
gccggtaaactagacatcaccaaacaaattaaagaaaaacgcaaggctatcaccgccgct
ttaagtatcatgcaactcgatgaacttaaatcccgcaaacgtgtccttcgtcggctaggt
ttcataaatgaacaagaagtagtcgagctcaaggcccgtgtcgcgtgtgaaatctcatct
accggtgatggtcacgaacttcttctctccgaacttctattcaatggttatttcaatgat
ttaactcctgaaatgtgcgcagctgtcctttcagttttcattttcgaagaaaagagtcaa
tgtcctccactgaaagaggaattggcagccaaatatcgagaaattcaagctcaagctagg
atcatcgccaaagttactgcggagagtaaattgaagatgaatgaggaagaatatgtgact
agttttaaatggcaacttatggaagttgtttatgtctgggcacaggggaagagttttgcg
gagatttgtaaaatgacagatgtctacgaaggatccctcatccgtctcttccgtcgtctt
gaagaacttctcagacaaatggcccaagcaggaaaggtcatgggctcagatgaggtatca
aataaattcgacgaatcgcttaagaaaatcaggagagatatcgttgcggcgcagagtttg
tatttgtaa
DBGET
integrated database retrieval system
