Sclerotinia sclerotiorum: SS1G_04434
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Entry
SS1G_04434 CDS
T01071
Name
(RefSeq) hypothetical protein
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
ssl
Sclerotinia sclerotiorum
Pathway
ssl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SS1G_04434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssl03041
]
SS1G_04434
Enzymes [BR:
ssl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SS1G_04434
Spliceosome [BR:
ssl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
SS1G_04434
Complex C
U5 SnRNP specific factors
SS1G_04434
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_PWI
BRR2_plug
ResIII
Helicase_C
AAA_22
Motif
Other DBs
NCBI-GeneID:
5490799
NCBI-ProteinID:
XP_001594627
UniProt:
A0A1D9PW28
A7EGJ3
LinkDB
All DBs
Position
Unknown
AA seq
2224 aa
AA seq
DB search
MTDQQRDVSQYKYAAMSNLVLQADRRFVTRRNDEVTGDPESLAGQISIRDMGSRTAREDA
PKQKKKASGLPDVERGGYREGEDVLEREQRKRKRGEPAQLRGSGILSAADALVEGIRYRP
RTSATRATYDLILTTVANNLGDVPHEVVRSATDAVLEYLKDDDMKDFDKKKEIDDLLGAS
MNPKQFNELVNLGKKITDYDAQDEDEEMADGDNSGENGAEIDDRQGVAVVFDDNSDDEGD
EVLNEIREESSEDEDDAQDRPGDEEVAMAGGAGVDRDEEPQEIPEEEAIIMDSGSVQNAD
SAKDKKDFIPAREIDAYWLQRQIGSVYTDAHVQQVKTQEVLHTLSGAPAEEGGDERPLRE
IENDLAELFDYEHHELVHKLIANRDKIVWLTRLARAEDAEARGVVEREIASEGLRWILDE
LRGVAPGDGSKKRKLEIKMDIDVPAEYINGGTKNEEKDKDGLVGGLQPRKLINLENLVFD
QGNHLMTNPKVKLPEGSTKRTFKGYEEIHVPPPKKRNDPSDRDIPVTEMPEWARVPFSST
VKLNKIQSQCFPTAFEDDGNMLICAPTGSGKTNVGMLTILREIGKNRNPETGEINLDAFK
IVYIAPLKALVQEQVGNFGARLKPYGIKVSELTGDRQLTKQQIADTQIIVTTPEKWDVIT
RKATDLSYTNLVRLIIIDEIHLLHDDRGPVLESIVSRTIRKMEQTGDPVRLVGLSATLPN
YRDVASFLRVDPLKGMFHFDGSYRPCPLRQEFVGITEKKAIKQLKTMNDVTYTKVLEHVG
KNRNQMIIFVHSRKETAKTARYIRDKALEMETIGQILRSDVSGTRETLSSEAEEVSDREL
KDLLPYGFGIHHAGMNRPDRTSVEELFHEGLIQVLVCTATLAWGVNLPAHTVIIKGTQVY
SPEKGSWVELSPQDVLQMLGRAGRPQYDTYGEGIIITTQNEMQYYLSLLNQQLPIESQFV
SRLVDNLNAEVVLGNVRSRDEGVEWLGYTYLFVRMLRSPGLYSVGADYEDDSALEQKRVD
LIHSAAMVLEKSNLIKYDKKTGKLQATELGRIASHYYITHGSMLTYNHHLQPSITPIELF
RVFALSDEFKYIPVRQEEKLELAKLLGRVPIPVKESVEEPHAKINVLLQAYVSRLKLDGL
ALMADLVYVTQSAGRILRAIFEITLKKGWSSVAKTALELCKMAEKRMWPTMSPLRQFPGC
PRDIVQKAERIDVSWANYFDLDPPRMGELLGLPKAGRTVCNLVAKFPRLELQAQVQPMTR
SMLRVELTITPKFEWDEEIHGAAESFWIIAEDCDGEDILFHDQFILRKDFAQSEMNEHLV
EFTVPITEPMPPHYFITVISDRWMNCETKLAVSFQKLILPEKFPPHTPLLDLQPLPVAAL
KIDEFRSLYPDWDRFNKIQTQTFKSLFDTDDNVFVGASTGSGKTVCAEFALLHHWKKADS
GRAVYIAPFQELVDLRHLDWQKRFSTLLGGKEIVKLTGETTADLKLLERGDLILATPSQW
DVLSRQWQRRKNIQNVQLFIADELHMLGGQAGFVYEIIVSRMHYIRSQTELPLRIVGLGV
SLANARDIGEWIDAKKHNIYNFSPHVRSVPLELHIQSFTIPHFPSLMLAMAKPTYLAINQ
MSPDKPALVFVPSRKQARATTRDLLLACVASDDEDRFLHADVDEMKPLLERIQEEALAES
ISHGIGYFHEALSTGDKRIVKHLYDNGAIQVMVASRDVCWELDSKAHLVIVMGTQFYEGR
EHRYVDYPLSEILQMFGKATRPMEDKISKGVLMVPAVKREYYKKFLNEALPIESHLQVYL
HDAFVSEISTKMIESASDAINWTTFTYFYRRLLANPSYYSLKDTSHEGLSAHLSELVETT
LKDLAEFKIIDLDEEDDSVTPLNAAMIAAYYNISYITMQTFLLSLTGRTKLKGILEIVTS
ATEFESIQIRRHEDSLLRRIYDRLPVKMAQPSFDSPHFKAFVLLQAHFSRMQLPIDLAKD
QEIILTKVLGLLSATVDVLSSDGHINAMNAMEMSQMVVQGMWDRDSPLKQIPHFTPEVIK
AANESGIKDIFEFMDAMDPSENPDYEALIKRLGLSQTQLAQAAHFTNSKYPNIELDFEVE
DPEEIVSGSPAYIKIKILRDVDEDDDAAEVDTSVHAPFYPAKKMENWWLVVGDESSKTLL
AIKRVTIGKALNLRLEFTVPTPGEHDLKLFLMSDSYVGVDQDPSFHVSVAEGMDEDDEED
EDEE
NT seq
6675 nt
NT seq
+upstream
nt +downstream
nt
atgacggaccaacagcgcgatgtatcgcagtataaatatgcggcgatgtccaacctggtt
ctccaggcggatcgtagattcgttactcgccgcaacgatgaggtgacaggagatccagaa
tcacttgcggggcaaatcagcattcgggatatggggtcgcgaactgcacgcgaggacgcg
ccgaaacagaagaagaaagcttcgggccttccagatgttgagagaggaggttatcgcgaa
ggcgaggatgtcttggaacgagaacagcgcaaacgcaagcgtggagagccagcacaactt
cgaggaagtggaatattgtcggcagcagatgcattggttgagggaattcggtacagacct
aggacttcggcgacgcgagcaacttacgatcttattttaactacagtagctaataatctc
ggagacgttccccatgaagttgttcgaagcgccacggatgctgtgttggagtatttaaaa
gacgacgacatgaaagattttgacaagaagaaggaaattgatgatctactaggcgccagt
atgaatccgaaacagttcaacgagctcgtgaacctaggcaaaaaaattacagattacgac
gcgcaggatgaagacgaagaaatggcagatggagacaacagcggcgaaaatggcgcggaa
atagatgaccgccagggagtagcggttgtattcgacgacaattccgacgacgagggtgat
gaagtgcttaatgaaattcgagaagagtcgtccgaagacgaggatgatgcacaagatcgt
cctggtgacgaggaagtcgctatggctggtggtgccggagtcgatagagatgaagaaccc
caggaaatacccgaagaggaagcaataattatggactctggttccgtgcagaatgctgac
tcagctaaagacaagaaagatttcataccagctcgtgaaattgatgcatattggttgcaa
cgacagattggctcagtttacacggatgctcatgtacagcaagttaaaacgcaggaagtt
ctgcatacactttctggagcacccgctgaagaaggtggcgatgagaggcctcttagagaa
atcgaaaatgatctcgcagaactgtttgactacgagcatcacgagctggtacataagctg
atcgcgaaccgggataaaatagtctggcttacgcgtttagctcgagctgaagatgctgaa
gctcgaggtgttgttgagcgtgagattgcttccgagggactacgatggattttggacgag
cttcgtggagttgctccaggagatggatcaaagaaacggaaactggaaattaaaatggac
atcgacgttccagctgaatacatcaatggcggcacgaagaatgaggaaaaggacaaagat
ggtttggttggtggactgcaaccacgaaagctcatcaaccttgaaaatctcgtctttgac
caaggcaatcatttgatgacgaaccctaaggtcaaattgcccgaggggtctaccaagcga
acgtttaaaggatacgaagagattcacgtgccacctcccaagaaacgcaacgacccttcc
gatcgtgatattccggttacggaaatgcctgaatgggcacgggtgccgttctcatctaca
gtgaagctcaacaagattcaatctcagtgcttcccgacagcttttgaggatgatggtaac
atgctcatttgcgcgcccactggaagtggtaagaccaatgttggaatgttgactatatta
cgagaaatcggtaaaaaccgcaacccagagactggagaaatcaatctggacgcatttaaa
atagtttacattgcacctctcaaagccttagttcaagaacaagttggaaattttggtgct
agactgaagccatatggtatcaaggtttccgaattgactggagatcgtcagctcacgaag
caacaaattgccgatacccaaatcattgtgacgacccctgaaaaatgggatgtcatcact
agaaaagctactgatctgagttacaccaatcttgtccgtctcatcattattgacgagatc
catcttttgcacgatgaccgtggaccagttctagaaagcattgtgagtcggacgattaga
aagatggagcagacgggcgatcctgttcgtctggtcggtctttcagccacattgccaaat
taccgtgatgtcgcaagctttcttcgcgtcgaccctctcaaagggatgttccattttgat
ggatcataccgtccttgtccgcttcgccaggaatttgttggcataacagaaaaaaaggcc
atcaaacaactaaagacaatgaatgacgtgacttataccaaggttttggagcacgtaggc
aagaatcgaaaccagatgattatttttgtgcactctcgtaaggagacagcaaaaacagct
agatacattcgagacaaagccctggaaatggagacgattggacaaatattgcggagtgat
gtgtcgggaactcgagaaactcttagttccgaggctgaggaggttagcgatcgggagctt
aaggatttgttaccatacggtttcgggatccatcatgctggtatgaacaggcctgatcga
acatctgtcgaggaactctttcatgaaggtctaattcaagtccttgtatgcactgctaca
ttggcatggggtgtcaacctaccagcgcacactgtcattattaaaggtactcaagtctat
tccccggaaaaaggcagctgggtggaactcagtccccaagatgtacttcaaatgcttgga
cgtgctggtcgaccgcagtacgacacttacggggaaggtatcatcatcaccacgcagaac
gaaatgcagtattatctgtcactcctgaatcaacaattgccgatcgagagtcagtttgtt
agcagattggtagacaacctaaatgcagaggttgttcttggcaatgtccgtagtcgagac
gaaggtgtcgagtggttaggatacacctatttattcgtccgaatgcttcgatcacctgga
ttgtatagcgtaggagccgattatgaagatgacagtgcacttgagcaaaaacgagttgat
ttaattcattctgctgctatggttctggagaagtctaaccttatcaaatacgacaagaag
actggcaaactacaagcgaccgagcttggcagaattgcttctcattattacattacacac
ggctccatgttgacttataatcaccacctccaaccatcgatcacaccaattgagctcttc
cgcgtatttgcgttgagcgacgagttcaagtacatcccagttcgccaagaggaaaagttg
gaactggccaaacttttgggacgtgtgccaattcccgtaaaagagagtgttgaggaaccc
catgccaaaataaatgtactgctacaagcttatgtttcgagattgaaactggacggactt
gcgttaatggcagatttggtctacgtcactcaatcagctggaagaatcttgcgtgctatc
ttcgaaatcactctcaaaaagggctggtcatcggtagctaagacagctttggaactttgc
aaaatggcagagaagcgtatgtggcccactatgtcacctcttcgacaattccccggatgt
ccccgggacatcgtacaaaaagccgaaagaattgacgtctcatgggccaactacttcgat
cttgatccaccacgtatgggcgaattgctaggccttccgaaagctggccgaactgtctgc
aacctcgttgcaaaatttccccgattagaacttcaggcacaagtacagccaatgacgaga
tcaatgttgagggtggaattaaccatcacgcccaagtttgagtgggatgaagaaattcat
ggcgctgcggaaagcttttggatcatagccgaagattgtgacggcgaggacatacttttc
catgatcaatttatccttcgtaaagattttgctcaatccgagatgaatgagcatcttgtc
gaattcacggtccccatcacagaacccatgccgccacattattttatcaccgtcatctcg
gatcgatggatgaattgtgagaccaagcttgcagtctcgttccagaaactcatcttacct
gagaaatttccacctcatacaccattgttggatttgcagcctctacctgttgcagcactg
aaaatcgatgaattcagatcgctttatcctgactgggatcgctttaacaaaatccaaaca
caaacatttaaatcactttttgatacagatgacaatgtttttgttggagcgtccacagga
agcggcaagactgtttgcgcagagtttgcgttactccatcactggaagaaggccgactcg
ggacgtgctgtctatatcgctccgttccaagaacttgttgatcttcgacatctagattgg
caaaagcgtttttcgacgcttctcggaggcaaagaaatcgtgaagctcacaggagaaacc
actgccgacctcaaacttttggagaggggtgatttaatccttgctactccttcccaatgg
gatgtcttatcgcgacaatggcaacggcgaaagaacattcagaatgttcaattattcatc
gcagatgaactgcacatgcttggtgggcaggctggatttgtttatgaaatcattgtctct
cgcatgcattacatccgatcacaaactgaattaccactgcgaatcgtgggcctgggtgtc
tcacttgccaatgctcgtgacatcggagaatggattgacgcgaagaagcataacatctac
aacttcagcccccacgtccgttcagttcctctagagcttcatattcagtcattcactatt
ccccatttcccctctctcatgcttgctatggcgaagccaacctaccttgccataaatcaa
atgtcgccagacaagcctgctctggtattcgttcctagtagaaagcaggctcgtgctact
acccgtgatttactccttgcatgtgtagctagcgatgacgaagatcgtttcctacacgcc
gacgtcgatgagatgaagcctttactagagcgcatccaagaagaagcacttgcagagtct
atctcgcacggcataggttattttcatgaggctcttagcacgggcgataaacgtattgtg
aaacacctttacgataatggtgccatacaagtaatggttgcgtctcgtgatgtttgctgg
gaacttgattccaaagcacatttagttattgtgatgggtacgcagttctatgaaggcagg
gagcaccgctatgttgattatcctcttagtgagatactgcagatgttcggcaaagcaaca
cgacccatggaagacaaaattagtaaaggcgttctgatggtaccagcagtcaaaagagag
tactacaagaagttcttgaatgaagctcttccgattgagagtcacctccaggtgtactta
catgatgctttcgtgtctgagatcagtacaaaaatgatcgagtcagctagtgatgccatc
aattggactactttcacgtacttctatcgaagattacttgccaatcctagctactacagt
ctcaaagacacatcccatgaaggtttgagtgctcacctctcggagcttgtagaaactacc
ttgaaagacttggccgagttcaagatcattgatttggatgaagaggatgattctgtcact
ccattaaatgcagcgatgattgctgcttattacaacatttcgtacataaccatgcagacc
tttttgctgtctttgactggtcgcactaagcttaagggtattctggaaattgtcacttcg
gcgaccgagttcgaatccatccagattaggagacacgaagatagtctactacgtagaata
tatgatagacttcctgtcaagatggcacaaccaagctttgattcgcctcacttcaaggca
tttgtacttcttcaagctcatttttccagaatgcagctaccgatcgaccttgctaaagat
caagagattatcctgacgaaagtcctcggtctcttaagtgctaccgtggatgtcttgtct
tcggatggccacatcaacgccatgaatgccatggaaatgtcgcaaatggttgtacaaggg
atgtgggaccgcgacagtcctctgaaacagattcctcacttcacacctgaggtcatcaaa
gctgcaaatgaatctggtatcaaggacatcttcgagtttatggatgcgatggacccttcc
gaaaatccagactatgaagctctcattaaacgactgggtctctcgcaaactcaattagcg
caggctgcccactttacaaattctaagtatcctaacatcgagcttgactttgaagtggag
gatccggaggagattgtatctggatcaccagcttacattaaaattaagattttacgagat
gttgacgaggatgatgatgcggcagaggtggacacgtctgtacatgctcctttctacccc
gcgaagaaaatggagaattggtggttagttgtgggtgatgaaagctcgaaaactttactt
gcgatcaaacgggtcacaatcggaaaagcgctgaatcttcggcttgagtttacagtacct
acaccaggggagcatgatttgaagttgttcctcatgagcgacagctatgtgggtgtcgat
caagatcccagtttccatgtctcggtggcagaaggaatggacgaagatgatgaagaagac
gaagatgaagaatga
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integrated database retrieval system
