Sclerotinia sclerotiorum: SS1G_05270
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Entry
SS1G_05270 CDS
T01071
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ssl
Sclerotinia sclerotiorum
Pathway
ssl03013
Nucleocytoplasmic transport
ssl03015
mRNA surveillance pathway
ssl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SS1G_05270
09122 Translation
03013 Nucleocytoplasmic transport
SS1G_05270
03015 mRNA surveillance pathway
SS1G_05270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssl03019
]
SS1G_05270
03041 Spliceosome [BR:
ssl03041
]
SS1G_05270
Enzymes [BR:
ssl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SS1G_05270
Messenger RNA biogenesis [BR:
ssl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
SS1G_05270
Spliceosome [BR:
ssl03041
]
Complex C
Other components
EJC/TREX
SS1G_05270
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
SS1G_05270
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
AAA_22
Motif
Other DBs
NCBI-GeneID:
5490006
NCBI-ProteinID:
XP_001593842
UniProt:
A7EIX7
A0A1D9Q9Z0
LinkDB
All DBs
Position
Unknown
AA seq
444 aa
AA seq
DB search
MSAAEEDLIDYSDEELATTEAPAPAAGANGGVKGDSGNLTVSGNAAAAKKGSYVGIHSTG
FREFLLKPELLRAISWCGFEHPSEVQQVCIPQAILGTDVLCQAKSGLGKTAVFVLTTLQQ
VEVVAGETSVLVMCHTRELAYQIRNEYQRFCHFMPDVKIGVFYGGVPISKDVEVLKNPET
HPHIIVGTPGRLNALVRDKYLRLNSVKVFVLDECDKMLDQIDMRRDVQEIFRATPPQKQV
MMFSATLSQEVRPICKKFMQNPLEIYIDNETKLTLYGLQQYYIKLEEREKNRRLNELLDE
LSFNQVIIFVKSTVRATELDKLLRECNFPSVAIHSGVSQEERIKRFNDFKDFNKRICVAT
DVFGRGIDVNKINLAINYDLPPDADSYLHRVGRAGRFGTKGLAISFVSNEADQEVLKAVE
KRFEVALPEYPEGGVDSAAYTKTD
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccgccgaagaagatttgatcgactattccgatgaggagctcgcaacaacagag
gcaccggcaccagctgctggcgcaaatggaggtgtcaagggtgactcgggaaatttgacg
gtgtctggaaatgcagctgcggccaagaagggcagttatgttggtatccattcgactggt
ttccgcgaatttttattgaagccggagcttctacgagccatttcctggtgcggattcgaa
catccttcggaggttcagcaagtctgtattccccaagcgattcttggaacagacgtcctc
tgccaggccaaatctggtctcggtaaaaccgccgttttcgtcctcacaactctacaacaa
gtcgaggtagttgccggtgaaacatccgtcctcgtgatgtgccacactcgtgaattggcc
taccaaattcgaaatgaataccaacgcttctgtcatttcatgcccgatgtcaagattggt
gttttctatggtggagttcctatcagcaaggatgtcgaggtattgaagaacccagaaacg
catccgcacatcattgtcggtactccaggtcgattgaacgctcttgttcgggacaaatac
ttgcgcctcaacagcgttaaggttttcgttctcgatgagtgtgacaagatgttggatcaa
attgatatgcgtcgcgatgttcaggaaatcttcagagctacaccaccacaaaaacaagtc
atgatgtttagtgccactctttctcaagaggttcgacctatctgcaagaagttcatgcag
aaccctctcgaaatctacattgataatgagacaaagcttaccctttatggtcttcaacaa
tactacatcaagttagaagaaagagagaagaatagacgtcttaatgaattgctagatgag
ctttccttcaaccaagttatcattttcgttaagagcacagtcagagccactgaacttgac
aagctcttgcgcgaatgtaacttcccatctgttgctatccactctggtgtcagtcaagag
gaacgtatcaagcgtttcaatgacttcaaggatttcaacaagcgtatctgtgttgctacc
gatgtgtttggtcgtggtattgatgtcaacaagattaacttggccatcaactacgatctt
ccacctgatgcagattcgtaccttcatcgtgttggtcgtgctggtcgtttcggaaccaag
ggtctagccatctcattcgtcagcaatgaggcagaccaagaggttctgaaggctgttgag
aaaagattcgaggttgcacttccagagtaccctgagggaggtgtcgattccgctgcgtac
accaagactgactag
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