Sclerotinia sclerotiorum: SS1G_05411
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Entry
SS1G_05411 CDS
T01071
Name
(RefSeq) hypothetical protein
KO
K12586
exosome complex component RRP43
Organism
ssl
Sclerotinia sclerotiorum
Pathway
ssl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SS1G_05411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssl03019
]
SS1G_05411
Messenger RNA biogenesis [BR:
ssl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
SS1G_05411
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
5490352
NCBI-ProteinID:
XP_001593983
UniProt:
A7EJB8
A0A1D9QAE5
LinkDB
All DBs
Position
Unknown
AA seq
344 aa
AA seq
DB search
MTSTAQPTLSFPRETFAKLSPHPYLLAHLQPSSPTNSSKRANGRSPTQFRGPHINTGSLT
HAEGSAVVRIGDTAVVCGVRGEILLASNVGTYRVDKSTTAPSSRPGYNEAKELDLLVPNI
ELATGCSPAFLPGQPPTTLAQSLSTRIYSLLHSSRMVDDEDLRIWYQPPDLNEQDRMEDE
EEPESVEPEVKAFWTLYIDILFISLDGNPFDAAWAAVVSALRNVRLPKAHWDVDREMILC
DDEISLSKRLNLRGLPVAVTCLVFKAKEQKRGKDKKYWVLADPDTFEEGLCDESITMVVD
CEAGKPKIMGLSKVGGTTVGRDEMKHILELAETRWHELSPLLSG
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgacatctacagctcaacccacactctcgtttcctcgggaaacttttgcgaagctctct
cctcatccatatctcctcgcacatctccaaccaagctctccaactaattcatctaaacgc
gcaaatggccgatcgccaactcaatttcgtggcccacacatcaataccggctcactcact
catgctgagggtagcgcggtcgtacgtataggagataccgccgtcgtctgtggagtccga
ggtgaaattcttcttgccagcaatgttggaacctacagagtcgacaagtctacgaccgct
ccctcgtcgcgaccggggtacaatgaagcaaaagaattggatttactggttccaaacatt
gagctagctacaggatgttcgcctgcatttttacctggtcagccaccgactacattggcg
caaagtttaagcacgaggatatattcattattacacagttcgcgcatggtagatgatgag
gacttgagaatttggtatcagccaccagatctgaacgaacaggatagaatggaagatgaa
gaagaaccagagagcgttgagcccgaagttaaggcattttggactttatacatcgacatt
ttgttcatttcgcttgatggaaacccatttgatgctgcttgggccgctgttgtatccgct
ttgaggaatgtgagattaccaaaggcacattgggacgtagatcgagagatgatactttgt
gatgatgagatatctttatccaagagacttaatttgagaggactgccagttgctgtcaca
tgtttggtattcaaggcaaaagagcaaaagcgcggaaaggataagaaatattgggtcttg
gcggatccggacacatttgaagaaggattatgcgatgagtctatcactatggtcgttgac
tgtgaagcaggcaaaccaaaaataatggggttgtcgaaagttggcggcacaacagttgga
agggacgagatgaagcacattctggagttagccgagacaagatggcatgaattaagtcca
ttgctaagtggataa
DBGET
integrated database retrieval system
