Sclerotinia sclerotiorum: SS1G_05629
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Entry
SS1G_05629 CDS
T01071
Name
(RefSeq) ATP-dependent RNA helicase DED1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ssl
Sclerotinia sclerotiorum
Brite
KEGG Orthology (KO) [BR:
ssl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssl03019
]
SS1G_05629
03041 Spliceosome [BR:
ssl03041
]
SS1G_05629
03036 Chromosome and associated proteins [BR:
ssl03036
]
SS1G_05629
Enzymes [BR:
ssl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SS1G_05629
Messenger RNA biogenesis [BR:
ssl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
SS1G_05629
mRNA cycle factors
Common to processing body (P body) and stress granule
SS1G_05629
Spliceosome [BR:
ssl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
SS1G_05629
Chromosome and associated proteins [BR:
ssl03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
SS1G_05629
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
5488949
NCBI-ProteinID:
XP_001592708
UniProt:
A7EJY3
A0A1D9Q550
LinkDB
All DBs
Position
Unknown
AA seq
678 aa
AA seq
DB search
MADQLNMNGLNLNGGEPRSYIPPHMRGKMGGPAPAGPPANLNGSAWAPQGNGYANGPRPA
GGDSWANAPDFTPRGNGAPRGGNNWNPSGPPSFNKNAYGNPAAGAGGPGSAGGAGGAGGG
AGQARGGGDGQWRDGKHIAGPANARLERELFGIADDPTKQQTGINFEKYDDIPVEASGQD
VPEPVLKFTNPPLDDHLIKNIELAHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGF
LFPILSQAFQTGPSPIPANAAGSFGRTRKAYPTSLILAPTRELVSQIFDESRKFAYRSWV
RPCVVYGGADIGSQLRQMERGCDLLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDM
GFEPQIRRIVEGEDMPGVQNRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENI
TQKVEYVEDIDKRSVLLDILHTHGAGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRT
QRERERALEMFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAG
NTGISTAFFNRGNRGVVRDLIELLKEANQEIPAFLENIAREGAGFGGGRGGRSGGRGRGG
GANRDFRKFGGGGGGGFNGGGGFGGPPASGGYGGGGGFGGPPAPASYGPPPGQYGGGGYG
GGGGAYGNPSAGGGQSWW
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcggatcaactcaacatgaatggtctcaacctcaacggtggtgaaccacgctcatat
attcctccccacatgcgaggcaagatgggtggccctgctccagccggtccaccagcaaac
ttgaatggcagtgcttgggctcctcaaggcaacggatacgctaatggtccacgtccagct
ggaggcgattcttgggctaacgctcccgacttcaccccacgcggaaatggtgcgccacga
ggtgggaataactggaacccatctggccctccatccttcaacaagaacgcttatggtaac
cctgcggcaggagctggtgggcctggtagcgccggtggtgctggtggtgctggtggtggt
gctggccaagctcgtggtggtggagatggacaatggcgagatggaaaacacattgctggt
cctgcaaatgctcgtttagaacgtgagctcttcggtattgcagatgacccaaccaagcaa
caaaccggtatcaactttgagaaatacgatgacatcccagttgaagcatctggtcaagat
gttcctgagccagttctcaaattcaccaaccctccactcgatgaccatctcatcaagaac
attgagttggcacattacaaagtcccaacccctgttcagaaatactctattccaattgtt
atgggtggccgtgatttgatggcttgtgcccagactggttcaggaaagactggtggtttt
ttgttccccatcttgtctcaagcatttcaaaccggtccatctcccattccagccaatgct
gcaggaagctttggacgcactagaaaggcatacccaacctctttgatcctcgctcccact
cgtgagcttgtttcccaaattttcgatgaatcacgcaaattcgcctacagatcttgggtt
cgcccttgtgttgtttatggtggtgctgatattggttcccaactccgtcaaatggagcgc
ggttgtgatcttctcgttgctaccccaggtcgtcttgtcgatttgattgagcgtggccgt
atctccctccaaaacatcaagtacttggttctcgatgaggctgatcgtatgttggacatg
ggtttcgaaccacagattcgacgaattgtcgagggtgaagatatgccaggtgttcaaaac
cgtcaaactctcatgttttcagccaccttcccccgcgatattcaaatgctcgcccgtgat
ttcttgaaggattacgtcttcttgtctgttggtcgtgttggttctacctctgagaacatc
acccagaaggttgaatacgttgaggacattgacaaacgttctgtcctcttggacattctc
cacactcacggtgctggtcttacactcatcttcgttgaaactaagcgcatggccgattcc
ttgtcggacttcttgatcaaccaaaacttccctgccacttccattcacggtgatcgtact
caacgtgagcgtgaacgtgctcttgagatgttcagaaacggccgatgcccaatcctcgtt
gcaactgctgtcgcagccagaggtttggacatccctaacgttactcacgttgtcaactac
gatcttcctaccgatattgatgattatgttcatcgtattggtcgtacaggtcgtgctggt
aacactggtatctccaccgcattcttcaaccgtggaaaccgcggtgtcgttcgtgatctc
atcgaacttttgaaggaggctaaccaagagatcccagctttcctcgagaacattgctcgt
gaaggtgctggtttcggtggtggtcgaggaggtcgatcaggtggtcgtggacgtggtggt
ggtgcaaaccgtgattttcgtaagtttggtggtggaggaggtggcggtttcaatggaggt
ggtggatttggtggacctccagcctctggtggatatggtggtggtggtggatttggtggc
ccacctgctccagctagctacggacctccaccaggacaatatggtggtggtggctacggt
ggtggcggtggggcctatggcaatccatctgctggtggtggccaaagctggtggtaa
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