KEGG   Sclerotinia sclerotiorum: SS1G_10828
Entry
SS1G_10828        CDS       T01071                                 
Name
(RefSeq) hypothetical protein
  KO
K12601  superkiller protein 8
Organism
ssl  Sclerotinia sclerotiorum
Pathway
ssl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ssl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SS1G_10828
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssl03019]
    SS1G_10828
Messenger RNA biogenesis [BR:ssl03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     SS1G_10828
SSDB
Motif
Pfam: Beta-prop_IFT122_1st Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_CDC20-Fz WD40_Prp19 Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_Vps41 WD40_Gbeta Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_HPS5 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd NBCH_WD40 WDR55 EIF3I Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_WDR90_POC16_2nd Beta-prop_DCAF12 Beta-prop_VPS8 WD40_MABP1-WDR62_1st Beta-prop_WDR19_1st DSE1_N WDR90_beta-prop_4th Beta-prop_WDR41 Beta-prop_Aladin Beta-prop_WDR35_TULP_N Beta-prop_SPT8 Beta-prop_NOL10_N YkcB_C Tricorn_2nd SHKBP1_KCTD3_C VID27
Other DBs
NCBI-GeneID: 5484523
NCBI-ProteinID: XP_001588381
UniProt: A7EZR1 A0A1D9QBA9
LinkDB
Position
Unknown
AA seq 331 aa
MSKQYLTTHTIDNAHKTDIFSLAVTPTSILSASGTSTLKIHSTLTTPPSLTQSLPAHKLG
CHHICTSRSGTVAASAGFDGTVSIWTNSESKSENAAEEWSHHGYVLDGNKPGEIWALALS
ADGQFLAGTNVDGKIGVWDLLQVGEEGKGENAGKKSVGKKIREYETKGSFGLCVDISADG
RFTASGHENGGVYVFNNDTGRMVHSLPGLVQPIRTIAFSPLSTYLAAAGDSATIALYSVA
HGEQVANMTGHTAWIFSIDWSFTGEYLASGAWDGKVKVWSVEGRNCVATHSETDKALWAV
KWLPKVQGRSEAFVTGGANGSLSFYREATGG
NT seq 996 nt   +upstreamnt  +downstreamnt
atgtctaaacaatacttgacgacgcacacgatcgataatgcccacaaaaccgacatcttc
tctctcgccgtcacgcccacctccatcctctccgcctcgggcacatcaaccctcaaaatc
cacagcacgctcaccacacccccctccctcactcaatcactacccgcgcataaactcggc
tgccaccacatctgcacctcgcgatctggaaccgtcgctgcatccgccggattcgatggt
acagtgagtatttggaccaatagcgagtctaagagcgaaaacgccgcggaagaatggtcg
catcatggttatgttctcgatggtaataaaccaggggagatatgggcgctggctttaagt
gcagatggacaatttcttgcgggcacaaatgtagatgggaagattggggtgtgggattta
ttacaggtgggtgaagaggggaaaggagagaatgcgggaaagaaaagtgtaggcaagaaa
attcgcgagtatgagactaaggggagttttgggttatgtgtggatattagtgcggatgga
aggtttacggctagtgggcatgagaatgggggtgtttatgtttttaataatgataccggg
aggatggtacatagtttacctggtctcgtccaaccaatccgcaccattgccttctcaccc
ctatctacgtatctcgcagccgctggagactccgcaactatagccctctactccgttgcc
catggcgaacaagtcgctaacatgaccggccacactgcatggattttcagcatagactgg
agttttacaggtgagtacctggctagcggtgcatgggatggtaaagtaaaggtatggagt
gtagagggtagaaattgtgtagctacgcacagtgagacggataaagcgctttgggccgtg
aaatggttgccaaaagtacagggcaggagcgaggcgtttgttacagggggagcaaatgga
agtttgagtttctatagggaagctactggtggttga

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