Sclerotinia sclerotiorum: SS1G_11243
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Entry
SS1G_11243 CDS
T01071
Name
(RefSeq) hypothetical protein
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
ssl
Sclerotinia sclerotiorum
Pathway
ssl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SS1G_11243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssl03041
]
SS1G_11243
Enzymes [BR:
ssl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SS1G_11243
Spliceosome [BR:
ssl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
SS1G_11243
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
WHD_HA2
DEAD
HA2_C
AAA_22
AAA_19
T2SSE
AAA_30
Flavi_DEAD
Cas3-like_C_2
ResIII
nSTAND_NTPase5
ABC_tran
SRP54
nSTAND3
Motif
Other DBs
NCBI-GeneID:
5484052
NCBI-ProteinID:
XP_001588001
UniProt:
A0A1D9QGE5
A7F0X4
LinkDB
All DBs
Position
Unknown
AA seq
996 aa
AA seq
DB search
MASKKYALLPMEEEEIGPAKVVAKKKEKRSHRESSSRRDRHRERSPRRERSPRKDTEQPS
KNIRNKANDDYEDRWGDEEYVSEEEPEFQEPASKRVKTSHSDDDISDSEKERRRDQAEKD
AFAQRLLSKNSDKSKKILEDRSDPLMAQRRALADDAAARSAAMPDIRERSRQEYLKKRET
ERLALLRRQVEDETRELNDPYSNLSQKEKAEFAKNREILRLADERLRIDDHLDGYAMPDD
YITEKGKLNQKKKQDALYKRYVEKDEYGQEKFVTEHEEWERQQEKLARNQIQSTERVDQG
EYDYILDEEQGIKWIMDSKLPGQGLDKEARFLGEQLKAAEQKAKTIEDTRKNLPIYAYKD
EFLAALDQFQTIILVGETGSGKTTQLPQYLHEAGYTKDGMKIGVTQPRRVAAMSVAQRVS
EEMGCKLGNEVGYAIRFEDCTSDKTLIKYMTDGHLLKEVMITPSLDEYQVIMIDEAHERT
VHTDILLALLKDLAKERPEIKLLIASATINAQAFSDFFDSAPIFNVKGRSYPVEIYNTPQ
PEANYLAAAITTLFQIHTSQPSGDVLIFLTGQDEIEAAEERISDISRKLGSRVPELVICP
IYANLPTDLQTKIFEPTPKGARKVVLATNIAETSLTIDGIVYVIDPGFVKENIYNPATGM
SKLVTVACSRASANQRSGRAGRVGPGKCFRLYTKWAFMNEMEESTTPEIQRTNLNGTVLL
LKSLGINDLLTFDFMDPPPTETLIGALNQLYALSALNNRGELTKIGRQMAEFPTDPQVAK
SIIASDQLACSDEVLSIMAMLGESSALFFRPKGEQRVHADSARARFTVKEGGDHLTYLNI
WNQWVDNDFSTVWAKENFLQQRSLTRARDVRDQLAKLCERVEVTIASCGASNIEPIQKAI
TAGFFANAARLQRDGDSYRTVKRNTTVYIHPSSVLMANDPPVKLVVYHELVQTTKEYMRS
CIPIKANWLHELAPHYHKKKEIEEMGEKKLSNRSRI
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atggcttccaaaaaatacgcgcttcttccaatggaagaagaggaaataggtcctgcgaaa
gttgtagcaaagaagaaggagaaaaggtcacatcgcgagagctcctcgcggcgtgacaga
caccgagaaaggtcccctcgtcgcgagagatctcctcgtaaagatacagagcagccttcg
aagaatatccgaaataaggcaaatgatgattatgaggatcgatggggcgatgaagaatat
gtttctgaagaagaaccagaattccaagagcctgcttccaaacgagtcaaaacaagccac
tcagacgatgacatttcggattcagaaaaagaacgaaggagagatcaagcagagaaagat
gcttttgcgcagaggctgctttcgaagaattccgacaagtcgaagaaaatcctcgaggat
agatccgaccctctcatggcacagcggagagctttggcagacgatgctgctgcaaggagt
gcagcaatgccagatataagggaaaggtcgaggcaagagtacctgaagaaacgtgagacg
gagcggctcgctctgctgaggagacaggtcgaggatgagacgagggagctgaacgaccct
tattctaatttgtcgcaaaaggagaaggcagagttcgctaagaacagagagattcttcga
cttgccgatgagagactgagaattgatgatcacttagatggctatgctatgccggacgat
tatatcacggagaaagggaaactcaatcagaagaagaaacaagatgcattatacaaacgc
tacgtcgagaaagatgaatatggccaggagaaatttgttaccgagcatgaggaatgggaa
aggcaacaggaaaagctagccagaaaccaaattcaaagtaccgaacgagtcgaccaaggc
gagtatgattacattttagacgaggaacaaggaattaagtggattatggattcaaagcta
cccggacagggtctggataaggaagcaaggttcctaggtgagcaattgaaagctgctgag
cagaaggcaaagaccatcgaggacacgaggaagaacctcccaatttacgcttataaggac
gaatttctagctgctctagaccagttccagactattatacttgtcggtgagacaggatct
ggaaaaacaacacaattgccgcaatatcttcatgaagcagggtatactaaggatggcatg
aagattggagtgacccaaccaagaagagtggctgccatgtctgttgcgcagcgtgtatcc
gaggagatgggatgcaagcttggaaatgaagttggttacgccattcgtttcgaagattgc
acgagcgacaagactcttatcaagtacatgaccgatggacatcttttgaaagaggtcatg
ataacaccttctctggatgaataccaggtaattatgattgatgaagctcacgagcggact
gtgcataccgacatactcctagctctactcaaagatcttgccaaagagaggccagaaatc
aaacttttgatcgcctcggcgacgatcaacgcacaagcattttcggatttcttcgacagc
gctcctattttcaatgtcaaagggcgtagttacccagttgagatttataacaccccacag
ccagaagcaaattaccttgctgctgctattaccaccttatttcagatacatacctctcag
ccgagtggcgatgtgctgatatttttaacgggtcaggacgagattgaggcggctgaagaa
cgaataagtgatatttcaagaaaattgggctctagagtacctgagctcgttatttgtcct
atttacgcaaatcttccaactgatctacaaaccaaaatcttcgaaccaacgcccaaaggt
gcacgaaaagtcgtcttggcaaccaatattgcagagactagtttaaccattgatggaatt
gtatatgttatcgacccaggattcgtaaaggagaacatttacaatccggcgacaggaatg
tcgaagttagttacagtagcatgttcacgggcatctgcaaatcagagaagtggtcgtgct
ggtcgtgtaggacctggaaagtgcttccgtttgtacacaaaatgggcgttcatgaacgaa
atggaagaaagtaccactcctgaaattcagcgaacgaatttgaatggcacagtattgcta
cttaagtcacttgggatcaatgatcttttgacctttgacttcatggaccctccacccaca
gagaccttaattggtgctcttaatcagctatatgctttgtctgctttgaacaaccgtgga
gagcttaccaaaattggtaggcaaatggctgaattcccaactgatcctcaggttgcgaag
tctatcattgcttcggaccaactggcctgctccgacgaagtgttgagcataatggcaatg
ttaggtgaaagctcggcactattcttccggccgaaaggggaacagagagtgcacgcggat
agtgcgcgagcccgctttacagtaaaggaaggaggtgatcacctcacctacctcaatatc
tggaatcagtgggtggataatgatttcagcactgtctgggcgaaggaaaatttccttcaa
cagcgatctctcaccagagcgagagatgttcgagaccagcttgcaaagctttgtgaacgt
gtggaggttacaattgccagctgcggagcatcaaatatcgagccaatccaaaaagcgatt
acggcagggttctttgccaatgcggcacgattacaacgagacggtgacagttatcgcaca
gtcaagagaaacaccaccgtgtacatacatccttcatcagtattgatggcaaatgatccc
cctgttaaactggtggtgtatcatgaactggtgcaaactacaaaggagtatatgcgcagt
tgcattcctatcaaggcaaattggctgcatgagctcgcaccacattatcacaagaagaaa
gagatagaggagatgggggagaagaagttgtcaaatcgaagtaggatataa
DBGET
integrated database retrieval system
