Sclerotinia sclerotiorum: SS1G_11309
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Entry
SS1G_11309 CDS
T01071
Name
(RefSeq) conserved hypothetical protein
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ssl
Sclerotinia sclerotiorum
Pathway
ssl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SS1G_11309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssl03019
]
SS1G_11309
03036 Chromosome and associated proteins [BR:
ssl03036
]
SS1G_11309
Enzymes [BR:
ssl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SS1G_11309
Messenger RNA biogenesis [BR:
ssl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
SS1G_11309
mRNA degradation factors
5'-3' decay
Decapping complex
SS1G_11309
Chromosome and associated proteins [BR:
ssl03036
]
Eukaryotic type
Gene silencing
piRNA pathway
SS1G_11309
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
5484089
NCBI-ProteinID:
XP_001588066
UniProt:
A7F139
A0A1D9QGJ0
LinkDB
All DBs
Position
Unknown
AA seq
535 aa
AA seq
DB search
MADVLATKLAATKINDDASPDNWKAGLNIPARDTRQQTEDVTATKGLEFEDFSIKRDLLM
GIFESGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALERINPKSSKVQCLI
LVPTRELALQTSQVCKTLGQHLGVNVMVTTGGTTLRDDIMRLAEPVHIIVGTPGRILDLA
GKNVADLSECNMFIMDEADKLLSPEFTIVIEQLLQFHPKDRQIMLFSATFPMTVKDFSDK
NMADPYEINLMDELTLRGITQFYAFVEEKEKVHCLNTLFSKLQINQSIIFCNSTNRVELL
AKKITELGYSCFYSHARMIQANRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD
FPKNAETYLHRIGRSGRFGHLGLAINLISWEDRFNLYNIEQELGTEIAPIPAIIPRNLYV
YETPENIPRPVSNFQTNTRQPSGRDQQQPTQHSGNQRSSGQFNNFNNGRQNGSGQNQNQG
QGQGQGQGPRQNQGQRQSYPRGRGGFGGGRGGGQGPRQNGFDNPRGGRGQGPPAQ
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgtgctggcaacaaagctggccgctactaagatcaatgatgacgcttcccca
gacaactggaaagctggtctaaacatcccagcgagagatacgaggcagcagaccgaggat
gttactgccaccaaaggcctcgagtttgaagatttctccatcaagcgagatctattaatg
ggcatattcgaatcgggtttcgaaaagccgtcaccaattcaagaagaggcaatccctgta
gctcttacaggacgggacatactggctagagcgaagaatggtactggtaaaactgccgcc
ttcgtcattcccgcactcgaacgtatcaacccgaaaagcagcaaggtgcaatgtctcatc
ttggtacctactcgagaactcgccctccaaacatcacaagtctgcaaaactcttggtcaa
cacctaggcgtcaacgttatggttactaccggtggtacgaccctacgagatgatatcatg
cgtctcgcagaacctgttcatatcattgtcggcacaccaggtagaattctcgacttggca
gggaagaatgtagcagatctcagtgaatgcaatatgtttatcatggatgaagctgataaa
ctcctctcacccgaatttactatcgttattgaacagcttctacaattccaccccaaggac
cgacagattatgctcttcagcgcaacctttcccatgaccgtcaaagacttctcagataag
aacatggccgacccttatgaaatcaatcttatggatgaacttactctacgtggtattact
cagttttatgcttttgtcgaagaaaaagagaaagttcattgcctcaacactttattctcc
aaactacagatcaatcaatcaatcatcttttgcaactctacaaatcgtgtcgaacttctt
gccaagaaaattacagaattaggctattcatgtttctacagtcatgcgcgcatgattcaa
gctaatcgaaaccgtgtattccacgactttcgaaatggtgtctgccgcaatcttgtttgt
tctgaccttttgacccgtggtatcgatattcaagcagtaaacgttgtcatcaacttcgat
ttccctaagaatgccgaaacttatcttcatcgtattggtagatcaggccgatttggacat
ctgggtctcgcaatcaacctcatcagttgggaggatcgttttaacttgtacaatatcgag
caggagcttggaacagagatcgcacctattccagcgattattcccagaaatctctatgtc
tacgaaacccccgaaaacattccacgtcctgtttccaattttcaaaccaacacccgtcaa
ccatctggacgtgatcaacaacaacctacacagcactctgggaatcagagatcttctggt
caatttaataattttaataatggacgccagaatggttctggccaaaatcagaatcaagga
caaggacaggggcaaggacaaggaccaagacaaaatcaaggtcagcgtcaaagctatcct
agaggccgaggcggatttggtggtggtagaggaggtggtcaaggaccacgacagaatggc
tttgataaccccagaggaggtcgaggccagggtccaccggctcaatag
DBGET
integrated database retrieval system