Sclerotinia sclerotiorum: SS1G_11882
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Entry
SS1G_11882 CDS
T01071
Name
(RefSeq) hypothetical protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
ssl
Sclerotinia sclerotiorum
Pathway
ssl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SS1G_11882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssl03019
]
SS1G_11882
Messenger RNA biogenesis [BR:
ssl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
SS1G_11882
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
GP52
Motif
Other DBs
NCBI-GeneID:
5483097
NCBI-ProteinID:
XP_001586853
UniProt:
A0A1D9QH94
A7F3N6
LinkDB
All DBs
Position
Unknown
AA seq
808 aa
AA seq
DB search
MAEDTPDFQSLQDEVQAALVSTIKTAGYISTEDLGFHRSLNPEVGSALDEQNARLLALAN
DLLKSAGTVSGLRVPILEDADDVDNNWRSVVDVVDSLLEKTDTCLDEYTGIIKRKLVEEP
SATSKSQRKFLDNSLRTQNLVKPQLAFEMKPDNEDTSPWLPLLKTKPHAKVPLEDSLGMI
TNDYDQKQYRHPYETEILQLQYPSAMFEKAEPINYLPVESTSATFVDTYEGVLEMLEELK
GAKEIAVDLEHHDTRSYVGLVSLMQISTREKDWIVDTLKPWRQQLQVLNEVFADPCIIKV
FHGAYMDIVWLQRDLGLYVVGLFDTHYACRRLGLAGGSLAFLLKKYIDFDADKKYQLADW
RIRPLPEEMFFYARADTHFLLYIFDNLRNELIDASNTETPETNPMETVLEKSKETSLLRY
ERQVYNAESGKGPGGWFSLIYKTPALLSSEQFAVFKAVHAWRDQIARKDDDSINFVMSNS
VVINLAKFMPMDMIALLSIIRPISYSVKSRTQELLEIIKAAKENGKDGPKMIDVLRRSPG
AAGSPGSNTGAKITSEKTSKLDVTPVDKTELTTETSSFWGGAFGSSIWEPSTTTPDQDSM
RLAIPLPQLSEEVFASSTTPLADRSRLAIPEAPTPIPSKTKDEAFVLKRGSKRKSETITD
PDEDQEVTDKYDITLDYSPVAEKERQQGKAEVLAESAERRAAYKAELKADKKLRKQQKKE
EAMKIESEKVAKDAEEEPEEHVEEEDFDYSKADSVLNSKKQKIEKGGKGGKAKKDKPFDP
YQKSMNAAKGMGRVQTGERGGRSATFKK
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagatacaccggactttcaatcactccaagatgaagttcaagctgctcttgtg
tcaaccatcaaaactgccggttacatatcaacggaagatctcggttttcatcgatcattg
aatcccgaggtgggaagtgctctcgacgaacagaatgcgcgtttacttgcgcttgccaat
gacttgctcaaatctgcaggtaccgtctcaggccttcgtgtaccaattttagaagatgcc
gacgatgtggacaacaattggcgcagtgtcgtggatgttgtggattccttactcgaaaag
accgatacttgtctcgatgaatatacaggtattatcaaaaggaaactagtcgaagagcct
tctgcgacatcaaaatcccaaagaaagttccttgataactcactccgtacacaaaacctg
gtgaagcctcaactcgcattcgagatgaaacctgacaatgaggatacatcaccatggcta
cctcttctcaaaactaaaccacatgcgaaggtaccgttagaggatagtcttggtatgatt
acaaacgattacgaccagaaacagtacagacatccttacgaaacggaaattttacaatta
caatatccaagtgctatgtttgagaaggcagaaccaataaattatctaccggttgagagt
acatctgcgacatttgttgatacctacgagggtgtcctggagatgctagaggagctgaaa
ggtgctaaggaaatcgcggtcgacttggagcatcatgatactcgttcatatgttggtctc
gtatctttgatgcaaatcagtacccgcgaaaaagattggatcgtggataccctcaagcca
tggaggcaacagcttcaagtacttaatgaagttttcgctgatccatgtataatcaaggtt
ttccatggtgcttacatggatatcgtatggctccaacgagatcttgggctctatgtcgtt
gggttgttcgatacacattacgcatgtagaaggttaggattagctggaggaagcttagct
ttcttattgaagaagtatattgattttgatgccgacaaaaaataccagttagcagactgg
cgaatcaggccacttccggaagaaatgttcttttatgctagagccgacacacatttcctt
ctctatatttttgacaatttacggaatgagttaattgacgcgtctaacactgaaacacct
gaaacaaatccaatggagacagtcctggaaaagtccaaagagacttcgttactccgatat
gagcgacaggtatacaatgcagaatctggaaaaggaccgggaggatggttttcactaata
tacaaaacgcctgctctcttaagtagcgagcaattcgcagttttcaaagctgtacacgcc
tggagagatcagatagcaagaaaggatgatgacagcataaattttgtcatgtcgaattct
gttgttattaacctagccaagttcatgcccatggacatgatagccttactgagcatcatt
cgacctatatcatacagtgtaaaatcacgcactcaagaactgctagaaatcatcaaggcg
gcaaaggaaaatggaaaagatggtccaaagatgatagatgtcctcagacgatcaccaggt
gcggccggtagcccaggatctaacaccggagcaaaaattacatcggaaaagacatctaaa
ctcgacgtaacgcccgttgacaaaaccgaacttacaaccgagacatcttccttttgggga
ggtgcatttggaagcagtatctgggaaccttcaaccacaacccccgatcaagatagcatg
agacttgcaatccccctacctcagctctcagaagaagttttcgcctcgtcaaccacaccc
cttgccgatcgatcccgtctcgccatacccgaagccccaacaccgatccctagcaaaaca
aaagacgaagctttcgttcttaaacgtggctctaaaagaaagagcgagaccattactgac
ccggatgaagatcaggaggtcaccgacaaatatgacataaccctcgactacagcccagtc
gcggagaaagaaagacaacaaggcaaagccgaagttttagctgaaagcgcagaacgtaga
gcggcgtataaagcggaacttaaagcggataaaaagttgagaaaacagcagaaaaaggaa
gaagcgatgaaaatcgaatctgaaaaggtagccaaagatgcagaggaagaaccagaagaa
catgtagaggaagaagattttgattacagtaaggcggattcggtactcaattctaagaaa
caaaagatagagaaaggtggaaagggtggaaaggcaaagaaggataaaccattcgatccg
taccagaagagtatgaatgcggcgaaggggatgggaagagtgcagactggggagaggggt
ggtaggagtgctacttttaagaagtga
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