Sclerotinia sclerotiorum: SS1G_12129
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Entry
SS1G_12129 CDS
T01071
Name
(RefSeq) hypothetical protein
KO
K12876
RNA-binding protein 8A
Organism
ssl
Sclerotinia sclerotiorum
Pathway
ssl03013
Nucleocytoplasmic transport
ssl03015
mRNA surveillance pathway
ssl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SS1G_12129
09122 Translation
03013 Nucleocytoplasmic transport
SS1G_12129
03015 mRNA surveillance pathway
SS1G_12129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssl03019
]
SS1G_12129
03041 Spliceosome [BR:
ssl03041
]
SS1G_12129
Messenger RNA biogenesis [BR:
ssl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
SS1G_12129
Spliceosome [BR:
ssl03041
]
Complex C
Other components
EJC/TREX
SS1G_12129
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_3
DUF6844
MCP_V20_C
Motif
Other DBs
NCBI-GeneID:
5483418
NCBI-ProteinID:
XP_001587100
UniProt:
A7F2I2
LinkDB
All DBs
Position
Unknown
AA seq
152 aa
AA seq
DB search
MADTEMDVDAPSSPQEQRNEPKNASMTTHSNATAVRSIEGWIIIVTNVHEEASEEDLNDK
FADFGEIKNLHLNLDRRTGYVKGYALIEYPTLEEARAAIDGAHNTKLLEQTVEVDFAFVR
PPPGGKGRGGRAPAKGRARSRSRSPNGRDGGD
NT seq
459 nt
NT seq
+upstream
nt +downstream
nt
atggctgataccgaaatggatgtcgatgcgccttcatcaccacaggagcagcgaaatgaa
ccaaagaatgcctcaatgacaactcactccaatgcgacagcggtacgatcgatcgaaggc
tggattatcatcgtcacaaatgtacatgaagaggctagcgaggaggatttgaatgacaaa
ttcgcagactttggagagatcaaaaatcttcatttgaacctggatagaagaactggatac
gtcaagggttacgcgctgattgaatatccaactttggaagaggcaagggcagcgatcgat
ggtgcgcataataccaagttgctggaacaaactgtggaggtagactttgcctttgttaga
ccgccaccaggaggaaaaggtcgaggaggtcgggcacctgccaaaggtagagccagaagc
cgatcccgtagtcccaatggtagagatggaggcgattga
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integrated database retrieval system