Sclerotinia sclerotiorum: SS1G_12221
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Entry
SS1G_12221 CDS
T01071
Name
(RefSeq) hypothetical protein
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
ssl
Sclerotinia sclerotiorum
Brite
KEGG Orthology (KO) [BR:
ssl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ssl03009
]
SS1G_12221
Enzymes [BR:
ssl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SS1G_12221
Ribosome biogenesis [BR:
ssl03009
]
Eukaryotic type
Pre-60S particles
Helicases
SS1G_12221
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
CTT_SPB4
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
5483428
NCBI-ProteinID:
XP_001587191
UniProt:
A7F2S3
A0A1D9Q375
LinkDB
All DBs
Position
Unknown
AA seq
625 aa
AA seq
DB search
MAIDGEKKKDPRAWDALTPSLAEWILDAIKSMGFEKMTPVQASTIPLFMGNKDVVVEAVT
GSGKTLSFLIPVVEKLLRLEEPIKKHHVGAIIVSPTRELATQIHSVLTSLLAFHEPSAGA
LKPLEEGEKRKPSSTLRVVSQLLLGGTTTPAQDLSRFLKNSPNLLISTPGRLLELLSSPH
VHCPQSSFEVLVLDEADRLLDLGFKDDLQKILSRLPKQRRTGLFSASVSEAVGEIVRVGL
RNPVKIAVKVKGAGGDKMTPASLQMSYLLTPPTHKFPALLSLLSQLQPTPQKSIIYLSTC
AAVDYFQPLLEAVLPKQFALVSLHGKHPPNVRQRNFSKYVAAVSPTILLTTDVAARGLDI
PQVDLVVQIDPPSDPKVFLHRCGRAGRAGRKGLSVIFLQPGREEDYIPFLEIRKTPITLF
KRPEISTTDDAAKILISKMRKEVLADRALYDKGQRAFVSWVQAYSKHQASSIFRVADLDW
TDLGNAWALVRLPKMPELKKWEGDKTLGIKLDMSEYAYKDKVREKARRVAMEEAKNAGPY
VPTEEQIARKKQREAWSQKHEKQDLKELKREKKKRKREIERLDKMTDEEKRVEQEKEREL
QALIEQVKRRKIEDDADEEFEGFAD
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggcgatcgatggcgaaaagaagaaagacccaagagcttgggatgcactcacaccttca
ttggccgaatggatactggatgccatcaagtcaatggggtttgaaaaaatgaccccagta
caagcatcaaccattcccttgtttatgggaaataaagatgttgttgtagaggctgtcaca
ggtagtgggaaaactttgtcctttttaatacctgttgtggaaaagttgttgcgattggag
gaacctatcaagaaacaccatgttggtgctataattgtctctccaactcgggagctcgcg
actcaaatccattcggtcctcacctctttactcgcatttcatgaaccttctgccggagcg
ctgaaaccattggaggaaggcgagaaacggaaaccttcgtcaacgttaagagtagtctca
caacttctactaggaggtacaactacccccgcgcaagacctcagcagatttcttaagaat
agtccgaatctcctaatttccacacctggcagattactagaactactttcctctccacat
gttcattgcccacagtcctcgttcgaggttttggtactggacgaggcagataggttattg
gatctaggttttaaggatgatttacagaagattctcagtcgtctgccgaagcaaaggcga
acaggtcttttcagtgctagtgtcagtgaagcagtaggggaaatagtaagggttggtctg
aggaacccagtgaaaatcgctgtgaaagtgaagggggctggaggggataaaatgacccct
gcgagtcttcaaatgtcttacctattgactccgccaacccacaagtttcctgctctgcta
tcattgctgtcacagcttcaaccaactccccagaaatctattatttatctttcgacttgt
gccgctgtcgattacttccaacctttactcgaggcagtcctgcccaagcaatttgctcta
gtttcattacatggcaagcacccacctaacgtaaggcagaggaatttctcaaaatatgtc
gctgcagtcagcccaactatactactcaccacagatgtagccgcaagaggtcttgacata
ccacaggtcgacttggttgtgcaaatagacccaccgtcagacccaaaggtgtttcttcac
agatgcggaagagcaggtcgagctgggcgaaaggggttgagtgtcatttttctacaacca
ggaagagaggaagattatatcccgtttcttgaaattcgtaaaactccgatcacgctcttc
aaacggcctgaaattagcacgactgatgatgctgctaaaattctcatctcaaagatgcgt
aaggaagtgctcgcagaccgtgcgctttatgacaaaggacagcgtgctttcgtcagctgg
gttcaggcatactcgaaacatcaagcaagtagtatattccgagttgctgaccttgactgg
actgatctaggcaatgcttgggcacttgtcagattacctaaaatgcctgaattgaaaaag
tgggaaggtgataagaccttgggcattaaactagatatgtctgagtatgcatacaaagac
aaagtgagggaaaaggcaagaagagtcgcaatggaggaagccaagaatgccggcccatat
gtaccaacggaagagcaaatagcaaggaagaagcaaagggaggcttggagtcagaagcat
gaaaaacaagatttgaaagagctcaagagggaaaagaagaagagaaagagagaaatcgaa
agactcgacaaaatgacagacgaagaaaagagggtagagcaagaaaaggagagagagcta
caggctttgatcgagcaggtgaaaaggaggaagattgaggatgatgctgatgaagaattt
gaaggttttgctgattag
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