Sclerotinia sclerotiorum: SS1G_12239
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Entry
SS1G_12239 CDS
T01071
Name
(RefSeq) hypothetical protein
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
ssl
Sclerotinia sclerotiorum
Pathway
ssl03440
Homologous recombination
ssl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ssl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SS1G_12239
03450 Non-homologous end-joining
SS1G_12239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssl03032
]
SS1G_12239
03400 DNA repair and recombination proteins [BR:
ssl03400
]
SS1G_12239
DNA replication proteins [BR:
ssl03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
SS1G_12239
DNA repair and recombination proteins [BR:
ssl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
SS1G_12239
BRCA1-C complex
SS1G_12239
NHEJ (non-homologous end-joining)
MRX complex
SS1G_12239
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
AAA_15
AAA_21
SbcC_Walker_B
SMC_N
AAA_29
DUF1722
AAA_22
AAA_16
AAA_13
Motif
Other DBs
NCBI-GeneID:
5483327
NCBI-ProteinID:
XP_001587209
UniProt:
A0A1D9Q3B1
A7F2U1
LinkDB
All DBs
Position
Unknown
AA seq
1336 aa
AA seq
DB search
MSKIEKMRICGLVLLISVMYQEHLGLLVSDRVRSFDHKGWENISFNTPLTLIVGLNGSGK
TTIIECLKYATTGAQPPNSKVGGAFIHDPKLCGEKEVLAQVKLSFQSTTGSRMVITRSMQ
LTVTKTARKMKTLDAGLMVNNGGERTAVSHKVGEIDKIMQSALGVSEAVLDNVIFCHQDD
SLWPMSEPSHLKKKFDDIFEATKYTKAVDSLKSLKKDYAQQIKGMIAEEAIAKDNKDKGE
KTKSRCEELASQIDQLSEEALKDKANMEAVREVVDAKQRQAAEFWELVQKLRTNKERVKF
SEENLESLQKRIKPLSESDEWLKSTLDQYADRILEMEQQDEQLQNQYRDQQQKMSANASE
LGKKQAELGRQQALKQAYEEELESRVQLVKSSASKHSIRGYDDDINESRVNEFMERIKKL
SRDKERDLERVKAATNDELKSVQTTLTELQNQHAIRVQEKVTAKQTISNNDRKMGPKKTE
LGFIQFDEGDKTGLESSYNETKDLLEKIRAQFERAGWEHRINASNGRLREFEDEEKSLRK
EAFEINKRSNDRAQLDYVIGELKKTKGKLDTMKATHGSKLDSILGPDWQVDTLGKDFQHA
LDREKDEVADATNEQEAAKKSYSEAGFRFNAVRDDLKAKKDQLKSCENAVLTSVRDEDGR
PLVSIEEYPRELNQLEEERDEIRDNIDGFKHKIDYFTQCLNTIQTKDMCKLCERAFVEEG
HRSAAMKKIQKLLNKDARETLQGQLEIHNEQIKVAKAAQSQYDIYQSLKDEIPRIEQDLK
KADEEKQRLLEEVEHHDSIVERKNARQRDVESLTNIISSIIRYNSDITDHEAKIDSLSSQ
QNIAGSIITADEIQERQTACSENMREVREQLTKVLSEKDAAKDKINDMERDLSRKSQRLR
DVIHGLAKKEALQKEIDELLDSNSQQREAINRADTELETLKPKIDTAKAKYEDIQQQGHA
KEREVRSQKEKLADTVRQFMQHEKNINGYIDSNGPEKLSACQRAINSIQQDQERIEEIMA
RITTELNALRAKKSDSDRLKTNISDNILYRQELAKLEVYKKQTIELEAQNVEGNFETLTK
EAEKIEAKFYDHRRLYQQKTAVLAEKDQNLAQYLLEWDLNYKNARTEYRTAMIKVKTTKA
AIDDLGKMITAMDKAIVKFHSVKMEEINRIAGELWQTTYQGTDVDTIMIRSEKDEGETAA
GNKKTNYKYRVVMVKQDVEMDMRGRCSAGQKVLACIIIRLALAECFGINCGLIALDEPTT
NLDQDNIRALAESLHGIIKSRQQQANFQLIIITHDEEFLKVMQCSDFCDDFYQVSRDQEQ
NSKIEKIPIAQVMEGN
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaatagaaaagatgagaatatgcgggttagtgttattgatttcggtcatgtat
caggaacatttgggcttactggtttccgatagggtgcggtcctttgatcacaagggttgg
gagaatatctctttcaacactcctctaacactcattgttgggcttaatggttcgggaaag
actacaatcatcgaatgtttgaaatatgcaaccactggcgcacaaccaccaaatagcaag
gttggaggagctttcattcatgatccaaaactttgtggggagaaggaggtactggcacaa
gtcaaactctcgtttcaaagtacgacaggatcgagaatggtcatcacaagaagtatgcag
ctcacggttacgaagacagcgagaaagatgaagactctagatgcaggattgatggtcaat
aacggcggcgagagaactgctgtgtctcacaaagttggagaaatcgacaaaattatgcaa
tcagctttgggcgtttctgaagccgttttggacaatgttatcttctgtcaccaagatgat
tcactatggccgatgagcgagccttcacatctcaagaagaaatttgacgacattttcgaa
gctacaaaatacaccaaagctgtcgatagcctcaaatctttgaaaaaagattatgctcag
caaattaaaggcatgattgcggaggaggcgattgccaaggataacaaggataaaggagaa
aaaaccaagagtcgttgcgaagaacttgcttctcaaattgatcagttgtcagaggaggct
ctcaaagacaaagccaacatggaagcagttcgagaggtggttgacgcaaaacagagacag
gcggccgaattttgggaattggttcaaaagctcaggaccaataaagaaagagtcaaattc
agtgaagaaaatctagaatcgcttcagaagagaatcaagccactttctgaatcggatgaa
tggcttaagtcaaccttagatcaatacgcggatcgaatactagaaatggagcaacaagat
gagcaattgcagaaccaatatcgagatcagcaacagaagatgtcagcaaacgccagcgaa
cttggcaaaaagcaagcagaattaggtcggcagcaagccctgaaacaagcctacgaagaa
gaacttgaatctagagttcagctagtcaagagttctgcctctaagcattccattcgaggt
tatgatgacgacatcaatgagtctcgggtgaatgaatttatggaaagaatcaagaagctc
tctcgtgacaaggagcgtgatttggagcgggttaaggcggccactaatgacgaattaaaa
agcgtccagaccacactgacggagcttcagaatcagcacgcaatacgtgttcaagaaaag
gtgaccgcgaagcaaactatttctaacaacgataggaaaatgggccctaaaaaaacagaa
cttggctttatccagttcgacgaaggtgataaaaccggccttgaatcatcctacaacgag
accaaagatctcctggaaaagattcgggctcaatttgaacgtgctggctgggagcatcgc
atcaacgctagtaatggacgtttgcgggagtttgaagacgaagagaaatcacttagaaaa
gaggcttttgaaatcaataaacgttctaatgaccgtgctcagcttgattatgtcattgga
gaactgaaaaagaccaagggaaaactagacaccatgaaggcgacccacggctcgaagctt
gattcaattcttggtccagactggcaagtcgatacccttgggaaggatttccaacatgca
ctagatcgagagaaagatgaagttgcagatgcaacaaacgagcaagaagctgccaaaaaa
tcctactctgaagcgggattccggttcaatgcagttcgtgacgacctcaaagccaagaag
gatcagttaaaatcctgcgagaacgcagtactcacttcggtcagggatgaagatggcaga
ccattagttagcatcgaagaatatcccagagagctgaatcagttggaggaggagcgcgat
gagatccgggataatattgatggtttcaaacacaagatcgattatttcactcaatgccta
aatactattcagacgaaagacatgtgcaaactttgtgagagggcgtttgtggaagaagga
catcgctcagcagcaatgaagaagattcagaaacttctcaacaaggatgctcgggaaact
ttgcagggacagttagagatccacaacgaacaaatcaaagtcgcaaaagctgctcaatca
cagtatgatatataccaatctctcaaagacgaaatcccaaggatagagcaagacctcaaa
aaggcggatgaagaaaaacagagattgcttgaagaagtcgagcatcatgacagtatcgtc
gagcgcaagaatgctagacaaagagatgttgagtctcttaccaatataatctcctctatc
attaggtacaacagcgatatcacggaccatgaggcaaaaatcgatagtttatcctcgcag
caaaatattgctggaagcatcattactgctgatgaaatccaagaacgtcagacagcctgt
agtgagaatatgcgggaggttagagaacaactgactaaagttttgtccgagaaggatgca
gccaaagacaagataaacgatatggagcgtgatctgtctcgtaaatcgcaaagacttcga
gatgtcattcatggattagcaaagaaagaagctttgcaaaaggagattgatgagcttctc
gacagcaattcacagcagcgggaagcaatcaatcgtgctgataccgagctggagactcta
aagccgaaaattgacactgcgaaggctaaatacgaagatattcaacaacaaggtcatgca
aaggaaagagaagtccgatctcaaaaggaaaagctagcagacactgtccgtcaattcatg
cagcatgagaaaaatatcaatggatacattgatagcaatggtcctgaaaagctttctgct
tgccagcgagcaatcaattcaattcaacaagaccaggagcgtattgaggaaataatggcc
cggattactaccgagttaaatgcacttcgagctaaaaagagtgattcggatcggctaaag
acaaatatcagcgacaacatcctatatcgtcaagaattggctaaacttgaggtatacaaa
aaacaaaccattgaattagaagcacagaatgtggaaggaaacttcgaaactttaacaaag
gaggccgaaaaaatagaagcaaaattctacgaccatcgccgtctttaccagcagaaaaca
gctgttcttgcagagaaagatcaaaatttggcacaatacttacttgagtgggatcttaat
tacaagaatgccaggacggagtaccgcactgctatgattaaagttaagaccacaaaggct
gctatcgatgatttaggcaagatgattacggctatggacaaagcaattgtgaaatttcac
agtgtgaaaatggaggaaatcaatcgaattgctggtgaactttggcagactacctaccaa
ggtacggatgtcgatacaattatgattcgttcggaaaaggatgaaggcgagacagcagct
ggtaacaagaaaacaaactataagtatcgagtggtgatggtaaagcaagatgttgaaatg
gatatgcgtggtcgttgtagtgcaggtcagaaggttctagcttgtatcattatccgtcta
gcgctagcagaatgcttcggtattaattgcggtctcatcgcattagatgaacccacgacg
aatctagatcaagataatatccgcgcactggcggaatctcttcatggtatcattaaatcc
cgtcaacagcaagcgaattttcaacttattattattactcatgatgaggaatttttaaag
gtcatgcagtgttcggatttttgtgatgatttttatcaggtttcgagggatcaggaacag
aatagtaagattgagaagattccgattgcgcaggttatggaggggaattga
DBGET
integrated database retrieval system
