Sclerotinia sclerotiorum: SS1G_12340
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Entry
SS1G_12340 CDS
T01071
Name
(RefSeq) hypothetical protein
KO
K14779
ATP-dependent RNA helicase DDX52/ROK1 [EC:
5.6.2.7
]
Organism
ssl
Sclerotinia sclerotiorum
Brite
KEGG Orthology (KO) [BR:
ssl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ssl03009
]
SS1G_12340
Enzymes [BR:
ssl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SS1G_12340
Ribosome biogenesis [BR:
ssl03009
]
Eukaryotic type
90S particles
Helicases
SS1G_12340
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Ima1_N
Motif
Other DBs
NCBI-GeneID:
5483256
NCBI-ProteinID:
XP_001587310
UniProt:
A7F342
A0A1D9Q4N1
LinkDB
All DBs
Position
Unknown
AA seq
721 aa
AA seq
DB search
MDILRLLSRSTKQSGQNGSQKVGGVATKLPSSGTSANPQLYHDPIPESRGKKRKRGGQSK
HVDTTEQSDGNLDFFSTDPATQKTKKSTSTNDAPKLAQSNPSSEPEPLLDEGECRQILKS
HRLKVTLLPGAKPQKKIKKSKKSKSAKATSSKEEIKQLYPQPLMAFEDLRATYKISGRLS
ENLKDQGYKIPTEVQMGSLPLLLKPSVALGNSSVDTDELSSTFDLLAVAPTGSGKTLAFL
IPVINDVVQRRRTSDKNHVLEAVIIAPTKELASQIVNEGKKLSIGTGVKILGMKKGMKIV
SSADAEEKEQLDDDEDDDESVDGATSSKQPLTRTDILVTTPLIFLHALSLGSTDDHAPLP
TVRTLVFDEADVLLDPLFRDQTLGIWNSCINPNLRVTLWSATMGSNIETLASSTIQTRQE
KLGLEKHSNLIRLVVGLKDSAIPNITHRLIYAATEPGKLIALRQLLRPTAKTTDGTESLR
PPFLVFTQTISRAIALHAELLYDIPAEAGGSTRIAVLHSDLSDSVRDQVMTRFRNGEIWI
LITTDILSRGVDFKGINGVVNYDVPNSGAAYIHRVGRTGRAGRDGGIAVTFYTKEDIPYV
KNVANIIAASEKQAGKPASEASMQKWLLDALPTPSKEEKKKLKKYGVEARRGGLNNAKDG
KDSKTGKSKSRMQISTKSGYERKLEHNRKGAIQGSKRRKQENVAEDDGETVVEDGWAGIE
D
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggatatcctaaggttactttctaggtcgactaagcaatccggtcaaaatggatcacag
aaagtaggaggtgttgctacgaaattaccctccagtggaacgtctgcgaatcctcaattg
taccacgatcccattcctgaatcgagaggcaagaaaagaaagagaggaggacaatctaag
catgttgatactacagaacaatcagatgggaaccttgatttcttttccaccgatcctgcg
acacagaagactaagaagagcacttccacaaacgatgcgccgaagcttgcgcaatcgaat
ccttcctcagagccggagccacttctagatgagggggaatgtcgacagatattaaaatcg
catcggttgaaggtcacccttctgccaggtgcaaaaccgcagaagaagattaaaaagtcg
aaaaagtcgaagtccgcaaaggctacgagctcgaaggaggagatcaagcagttatacccg
caaccattaatggcatttgaagatttgcgagctacatacaaaatatcgggcagattatca
gaaaacttgaaagaccaagggtacaaaattccaacggaggtccaaatgggaagcttacct
ctacttttgaagccttcagttgcattgggtaattcctcggtagatactgacgagttgtcg
agtactttcgacctgttagctgttgcgcctactggaagtggaaagacgctggcattcttg
ataccagtcattaatgatgtagtacaacggcgcagaacttctgacaagaatcatgttttg
gaagctgtgataatagcaccaacgaaagagctcgccagtcaaattgttaatgagggaaaa
aaacttagcattggaactggagttaagatcctaggaatgaagaaaggaatgaaaatagta
tcgagtgcagatgctgaggaaaaagagcagttggatgacgatgaagatgatgacgaatcc
gttgatggagctacctcatctaagcagccacttaccaggaccgacatactggtcactaca
ccattgatcttccttcatgccttatctttaggatcaactgatgatcatgctccattaccc
actgttcgcacattagtttttgatgaagcagatgttctcttagacccgttgttcagagac
cagacattagggatttggaactcatgtatcaatcccaatttaagagtcaccctctggtcc
gcaacgatgggttcaaatatcgaaaccctcgcttcgagcaccattcaaaccaggcaagaa
aagttaggcctagagaaacattcaaatcttattcgtctcgtggttggacttaaagattct
gccattcctaacatcacacatcgcttgatttatgctgcaactgagcctggtaaacttatt
gctcttcgacaattacttcggcccaccgcaaaaactacagatgggacagaatctctacgg
cctccattcctcgtcttcacacaaacgatatcccgagccatagctttacatgctgagctt
ctgtatgatattcccgctgaggcaggcggttctaccagaatcgcagtattgcattctgat
ctttctgactcagtcagagatcaagtcatgacacgatttcgtaatggggagatttggatc
ttgatcaccacggatattttatcacgaggtgttgatttcaaaggcatcaatggcgtagtc
aattatgatgttcctaattcaggagcagcttatattcatcgcgtaggacgtactggacga
gctggtcgcgatggtggtattgcagtaacattctataccaaagaggatattccttatgtc
aagaacgtcgcaaatatcatcgcggcgtccgaaaaacaggccgggaaacctgcgagcgaa
gctagtatgcagaaatggttattagatgcgctaccaacacctagcaaggaagaaaaaaag
aaattgaagaaatatggcgttgaagctagacgagggggtttgaataatgcaaaggatgga
aaggattcgaaaacgggaaagtcgaaatcaagaatgcagattagtacgaagagtgggtat
gagaggaaattggaacataataggaagggagctattcagggaagtaaaagacgaaagcag
gagaatgttgcggaggacgacggagaaacggtggtcgaggatggctgggcaggcattgaa
gattga
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