Sclerotinia sclerotiorum: SS1G_12348
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Entry
SS1G_12348 CDS
T01071
Name
(RefSeq) hypothetical protein
KO
K14311
nuclear pore complex protein Nup188
Organism
ssl
Sclerotinia sclerotiorum
Pathway
ssl03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ssl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
SS1G_12348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssl03019
]
SS1G_12348
Messenger RNA biogenesis [BR:
ssl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
SS1G_12348
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_C
Nup188_N-subdom_III
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
5483162
NCBI-ProteinID:
XP_001587318
UniProt:
A0A1D9Q3J7
A7F350
LinkDB
All DBs
Position
Unknown
AA seq
1836 aa
AA seq
DB search
MVPVAEASYFPDLGKCLKGEEILISWETAFFALLNIQESGARSTLEKFFKESRVLSLLAN
PVDVFPEPTTKTKSEFQSKLSPINADHSSAEYDVKKVSEDALWLSGTAKIDEVSALRIVV
QEHQSRAYAQLLGKLSEEELISLQDAFGNKRSTNLLSAGSLIGTSAEVAPTEEESQGNRR
VRDWYEGLHTEVLGRWKSLGASPHRMVELVQTIDAGLTKLFNERGSEWSLEGDGRDDLEL
EWASNQIVEATHMMETIFYYIFSSDTALEISHSDLVLEWFTFVSKFKFLDEVGMLHPTLQ
AVAVPLQTITAIISAAILNVDSCLIFLEKPSKDLAPADLAEGPNKPWLLNQAVIVKLHQI
LTDAASTSYMTAGPAVLAWSVILKHIKVRVAVRERLQRRRHEGLCDDDEDIDEPLPIGTE
PILAPDAYEEVLKQIKITDELVDYLALSAVNESRVFEVLANISRTLGDNYEAPFLPQLGS
SLRIAILELMKASAPDIGYNGPTLQTILSVVDGGQQYWDFVDLRNAESEFEPITYFVTDV
GLVREFWQNASMRYPWEASPFQNLVHSLAYLHVVDGGTHESIFSLLDSRSTFTYPLPYQF
VDYETIQEEDNNNSVQLTSDLPMFEPRGRGNNKRLLIGNGNQGQALALAAANGDLRIPAG
TAGVMIVENDPKVVYLTYAYRGMRYFGKLLETYLVAGEEYDAITGMETDAETVADIIGTF
ATGLLALSRSGKEAHEIQNDATEFFQTASSALNRNRDITLVISAIFEQELQRQSSESSTD
ASLDILISCVQYLHALLLFSPGRVWPLIGRSGLLFNDRGDGGKLSNIVGRIEVISGRYTF
LVSCTRLFEALVNDFAVNAIARNRKTTTASARFSQVQEHNVRVADKVLSEVLLYFTRYLT
EVLESSYTWQFDLPGEQLQLTCTIMSSFDKMLTYAFGIQGDPEEQPQSDSRPKSEIGRDP
KEHVVSPVPIMGALRPAAMHIVDSFLSKSSGPMKFGPILRTLFYGFNTRPTTLYANRTRL
VTEGVKSALQFSRKLLRISALLEKPSHLETQLFTAAPLIARLYAVNDSYRTPVIKLFEAM
IVSASSSTSEPPSLLGYLGAKTSKNFLNVVSDLDTPLIRDENVGSIWHFLSMIMSSRQQW
FANYVLTGKTPRDALKKKKPEATVSSLPKPLLLTALDNLSQIGDIPDSEALMMLEFVSLA
QNFWPWTMYELGNSTGFITYLSNYIKTLKPIQVSSRSEPAIKACYRTRIAAYIAEILAMH
LFHSRQTGKPSIAKDLMPNLDYYYENAGGLPTYNASLHGNLKQNFDSKYARSSLQSFKKT
DLEDRKFGENYFYDLQILDQMLHSDVAWTGRRNDGYKFELASANINLSLVDAQVALLNAW
KILAVELSSNITKESGQQETLVDAALKCLASNAQSPQAEKLYSRLLRTRADFALVACQRL
IEVNPRSSKMKGLLKIIWETIRSLDKNFELAIATGDGPYYRLLLKILFLALRVHAEDNNQ
GGIELRASTRKQKVESESPADIYMVVDIVERVVAGGLLDLAHIIHENHEESSPEDIALVT
GILQASLRIPGIEFHHAQIVTLMANCNTPRLATTLFSWSDQIAINGDPIYGELSILFLLE
LSSMATMAEQLAVDGVLGQVSSASITTYLRRGNVSPFADGAGIQRCYNIWVRGILPLILN
LLHSVGASIATEVALFMNQFPHLLAQSAAAFDAPESSRTTSISQPRHMCLSMASEVHSIA
LIVYILNGFREQLLGIQVVPGVNWDLGAVAENVEFWLGSRAVLRERIVPMGDKELEWRGK
KIQSGKAGALGCLDRLEEKVVIEMMGVRDVITGGDP
NT seq
5511 nt
NT seq
+upstream
nt +downstream
nt
atggtcccagtcgcagaggctagctattttcctgatctgggtaaatgtttgaaaggagaa
gaaatattgatctcttgggagacggccttctttgctctcttgaacattcaagaaagcgga
gcccgatctacacttgagaaattcttcaaagagtccagagtattatctttacttgccaat
cctgtcgatgtctttccggagcccaccactaagaccaaatccgaattccaatccaagctt
agtccgatcaacgccgaccattcctccgcagagtatgacgttaagaaggtatccgaagat
gcactatggttgagtgggacagctaaaatcgacgaggtttccgctctacgaatagtcgtt
caagaacatcagtcgcgggcatatgcgcaacttttgggaaaactctccgaggaagaattg
atcagtctccaggatgcctttggcaacaaaagatctacaaatttactctccgctggatca
cttattggcacaagtgcggaggttgcgccaacagaagaggaaagccaggggaaccgacgc
gtgcgcgattggtacgagggtctgcatacagaagttttaggcaggtggaagagcttgggt
gcctccccgcatcgtatggtggaactggttcaaactatcgatgcgggacttacaaaactg
ttcaacgagaggggtagtgaatggtccttggagggtgacggacgtgatgacctcgagctt
gaatgggcaagcaatcagattgttgaggcaacgcacatgatggagacaatattctattat
atattttcctctgatactgcgcttgaaatttcccactcagatcttgtacttgaatggttt
acctttgttagcaagttcaaatttctggacgaggtgggcatgcttcatccaactcttcag
gccgtggctgtgcccttgcagactatcaccgccattataagcgccgccatacttaacgtc
gatagctgtttgatattcctggagaaaccttctaaagatttagctcccgctgatttggct
gagggtccaaataaaccatggttgttgaaccaagctgtaatcgttaaactacatcaaata
ctcacagatgcagcctccacaagttatatgaccgctggcccggcagtcctcgcatggagc
gttattctaaaacacatcaaagtccgtgtcgctgttcgagagagactccagcgtcgacga
catgagggcctctgtgatgacgatgaagatattgatgaaccattgccaattggaacagaa
cctatccttgccccagatgcttatgaagaggtgctgaaacaaattaaaatcacggatgag
ctcgttgattatctagctttaagcgctgtcaacgagagtcgcgtgttcgaagttcttgca
aacatttcaagaacgcttggcgataactacgaggcacctttcctgccacaacttggttca
agcttgagaatcgcgatactggagctcatgaaggcaagtgcgcccgatattggttacaat
ggcccaacactgcaaaccattctttctgttgtagatggtggacagcagtactgggatttc
gttgatctacgaaatgctgaaagcgagtttgagcctatcacctatttcgtcacagacgtt
ggcttggttcgtgagttctggcaaaatgctagtatgcgttatccttgggaagcttctccc
tttcaaaacctcgttcactctctggcatatttgcacgttgttgacggaggtactcatgag
tcaatattctcattgctagactctcgatcgaccttcacatacccattaccatatcagttc
gtagattatgaaacgatccaggaggaagataacaacaattctgttcagctgactagcgat
cttccgatgtttgagccccgagggcgcgggaacaataaaaggcttctgataggaaatgga
aaccaaggacaggcactggcgttggcagcagccaatggggacctacgtattccagcggga
acagctggtgttatgatagttgaaaacgatccgaaagtggtttacctaacctacgcttat
cgtggtatgaggtattttgggaagttgttagaaacatatttggtagcgggggaagaatat
gacgctattaccggtatggaaacggacgctgagactgtagctgacattattggaacattt
gcgacggggctcctcgccttatccaggtcgggaaaagaggcgcatgaaatccaaaatgat
gctacggaattcttccagactgctagttcggcgttgaatcggaacagagatattacactt
gtaatatctgctatcttcgagcaagagttgcagaggcaatcgagcgaatctagcactgat
gcatcgctcgacattttgatcagttgcgtacaatatttgcatgcgttgctccttttttcg
cctggaagagtctggcctcttattggacgtagtggtcttctattcaacgatcgtggtgat
ggtggtaaactttccaatatcgtcggaagaattgaagttatatcggggagatacacattc
ctcgtatcatgcactcgactctttgaggcgctggtcaatgacttcgcagtaaatgctatc
gcgaggaaccgcaagacaaccacggcctcagctcgatttagccaggtccaggaacacaat
gttcgagttgccgataaagtcctctccgaggttctcctctactttactcgatacctgacg
gaggtactggaaagttcatacacatggcagtttgatttaccaggcgaacaactccagctc
acatgtaccataatgtcttcctttgataaaatgcttacctatgcctttgggatccaaggt
gatccagaagaacaaccacagtcggactctcgtccaaagtcagagatcggcagggatccc
aaagagcatgtggtttcccctgttccaattatgggggcgttaaggccagctgccatgcac
atcgttgatagctttttgtccaagtcctctggccctatgaagtttggaccaattcttcgg
accttgttctatggcttcaatactcgtcccactacgctgtatgcaaatcgaacacggcta
gtgactgagggtgtaaaatcagcacttcaattttccagaaaacttcttcggattagtgca
ttattagaaaaaccatcacacttggagacacagctattcaccgctgcacctctcatcgcg
agactttatgctgtaaatgatagctatcgcacacccgtcataaagttgtttgaagcgatg
atagtcagcgcttcgagtagcacctcggagcctccttcacttctaggttaccttggtgcg
aagacttcgaagaatttccttaacgtcgtgtcggacctggatacccctttaattagagat
gaaaatgttggatcaatatggcatttcctgtcaatgataatgagcagtcggcagcaatgg
tttgcaaattatgttctcacaggtaagacaccaagagatgcgttaaagaagaagaaacca
gaggctaccgtatcttcattaccgaaacccctacttctcacggctcttgacaatctctca
caaatcggagatattccggattcggaggctttgatgatgttagaattcgtctctttggca
caaaacttttggccttggaccatgtacgagctgggaaatagcacaggcttcattacttat
ctctctaactacataaagaccttaaaaccgattcaagtttcgtctagaagcgagccagca
atcaaggcttgttatcgtactcgaattgcggcatacattgcagaaattcttgctatgcac
ctctttcattctagacaaactggcaaaccttcaattgccaaagatcttatgccaaaccta
gactattactacgaaaatgcgggaggccttccgacctacaatgcatctctccatggcaat
ctcaagcaaaatttcgattccaagtatgctagatctagtcttcagagtttcaagaaaacg
gatctggaggaccgcaaatttggggagaactacttttacgatctacaaatacttgaccaa
atgctccattccgacgtagcttggacagggcgcagaaatgacgggtataagttcgaactc
gcgagtgctaacatcaacttatcattggttgatgctcaggtggctcttttaaacgcctgg
aagattcttgctgttgagctaagtagcaacataaccaaggaatctggccaacaagagacc
cttgttgatgctgctctcaagtgccttgcctcaaatgcgcagagcccacaagcagaaaaa
ttatattctcgattactccgaacacgggcagactttgcccttgttgcctgtcaacgattg
atagaagtaaacccaagaagctctaaaatgaagggcctactaaagataatctgggagaca
atccggagtttagataaaaactttgagcttgcaattgcaactggggatggaccgtattat
agactactcctcaaaatcttattcctggctctgcgagtccatgccgaagataataatcag
gggggtattgaactcagagcatcgacacgaaaacaaaaagtggaatcggaatcaccagca
gacatttatatggtcgtcgatattgtagagcgtgtagttgccgggggcttgcttgacctg
gctcatatcattcacgaaaaccatgaagagtcatccccagaagacatcgcgctcgttacg
ggcattctgcaagccagtcttcggatacctggcatcgaatttcaccacgcacaaatcgtg
actctcatggcaaattgcaacactcctcgtttagctactacactattttcttggtctgac
caaatcgcaataaatggcgatcctatctatggtgagctgagcatcctcttcctcttagaa
ctctcaagtatggccaccatggccgaacagctagccgttgatggcgtccttggccaggtc
agctccgcaagcataaccacttatctccgtcgcggcaatgtttctccgttcgctgatggt
gctggtatccaacgctgttacaacatttgggtccgcggtattcttcctttaattctgaat
cttcttcattcagtcggcgcatccatcgctacagaagttgcgctcttcatgaaccaattt
ccccatctccttgctcaatctgcagccgctttcgacgcacctgagtcctcacggacgacc
tcgatatcacaaccaagacacatgtgtttatcaatggcctcagaagttcactcgatagct
cttattgtctatattctcaatgggtttagagaacagctgctaggaatccaagttgtcccg
ggggtaaattgggatcttggcgcagtagcggagaatgtagaattttggctgggcagtcga
gcagtattaagagagaggattgtccccatgggtgataaggaattggagtggagagggaag
aagatacaatctggaaaggcaggagccttgggctgcttggatcggctagaggagaaagtg
gttattgaaatgatgggggttagagatgtgattactgggggcgatccctga
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integrated database retrieval system
