Sclerotinia sclerotiorum: SS1G_13464
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Entry
SS1G_13464 CDS
T01071
Name
(RefSeq) hypothetical protein
KO
K12881
THO complex subunit 4
Organism
ssl
Sclerotinia sclerotiorum
Pathway
ssl03013
Nucleocytoplasmic transport
ssl03015
mRNA surveillance pathway
ssl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SS1G_13464
09122 Translation
03013 Nucleocytoplasmic transport
SS1G_13464
03015 mRNA surveillance pathway
SS1G_13464
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssl03019
]
SS1G_13464
03041 Spliceosome [BR:
ssl03041
]
SS1G_13464
Messenger RNA biogenesis [BR:
ssl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
SS1G_13464
TREX complex
SS1G_13464
Spliceosome [BR:
ssl03041
]
Complex C
Other components
EJC/TREX
SS1G_13464
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
SS1G_13464
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
Smg4_UPF3
RBD_DEAH11
DUF1180
Motif
Other DBs
NCBI-GeneID:
5481721
NCBI-ProteinID:
XP_001585580
UniProt:
A7F784
LinkDB
All DBs
Position
Unknown
AA seq
324 aa
AA seq
DB search
MSSDKLGQSLDEILATQRASGAGRGGRGGRRGGRPSGGRNATAAPVGGVSKSKKPVKGSV
KPAPTGPSGGNAPSRIVVSNLPYDVTEQQIKLLISNLAQTNDGEYFHEAKLHTKSVQLVY
GPNGASRGEANITFHRPGDAAAAVSKLNGVKVDNRSLRVQLLVDAQAAAAFEEKAAKRLM
DRISSTPKPQPKSAVPNKANGKDQGSKRGGKRGSRGSIARPAKKTAEELDLEMADYWESG
NAAGGETGGDNQAANSTVQPAANGDANMDDEILVCTTKIVLASPVRIFTGEEATVLKILP
HPAPTTYFTLMLIVLLLLPHAFFL
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgataaacttggccaatctcttgacgagattctcgcaactcaaagagcctca
ggtgcaggtcgaggtggtcgcggcggtcgtcgtggtggtcgtccttcaggtggtcgtaac
gccaccgcagctccagttggaggcgtatcaaagagcaagaagccagttaagggttcagta
aagcctgctccaaccggtccttctggcggaaatgccccatctcgtattgtggtcagcaac
ctgccatatgatgtgactgaacagcagattaagctcctgatttcgaacttggcgcagacg
aatgatggcgaatactttcacgaagcaaaattgcacaccaaatccgttcaattagtatac
ggtccaaatggagctagccgcggtgaggccaacatcaccttccatcgtccaggtgatgct
gctgcagctgtatcaaaacttaatggtgtcaaggttgacaatagatcattgagggttcaa
ctgcttgttgacgcccaggctgctgctgctttcgaggagaaggccgcgaagagactcatg
gaccgcatttcgagcacaccaaaaccacaaccaaagtccgcagtgcccaacaaggcaaat
ggcaaggatcaaggatccaagagaggtggaaagagaggttcccgtggctctatcgctcgc
cccgccaagaagactgccgaagagctcgatttggagatggcagattattgggagagtgga
aatgccgcaggtggagagactggtggtgacaaccaagctgcgaattctacagttcaacca
gccgctaacggagatgcaaacatggatgacgaaatcttggtatgtacaactaaaatcgtt
ctcgccagccctgtaagaatatttacgggggaagaagcaactgtattgaaaatacttccg
catcctgctccaactacctactttacgcttatgttgattgtattactgctgcttcctcac
gctttctttctgtga
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