Sclerotinia sclerotiorum: SS1G_13866
Help
Entry
SS1G_13866 CDS
T01071
Name
(RefSeq) hypothetical protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ssl
Sclerotinia sclerotiorum
Pathway
ssl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SS1G_13866
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssl03041
]
SS1G_13866
Enzymes [BR:
ssl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SS1G_13866
Spliceosome [BR:
ssl03041
]
Complex C
Other components
Step II factors
SS1G_13866
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
HA2_N
DEAD
AAA_22
AAA_30
AAA_19
T2SSE
nSTAND3
Cas3-like_C_2
GIPC1_GH2
AAA_16
TsaE
SRP54
Motif
Other DBs
NCBI-GeneID:
5481311
NCBI-ProteinID:
XP_001585297
UniProt:
A7F8D5
A0A1D9QEB6
LinkDB
All DBs
Position
Unknown
AA seq
1202 aa
AA seq
DB search
MDDLESLEILSLVQRVASELQNHLGISDKTLAEFVIAQHAECSSLEEFQKKLEAMGADFP
QSLIESVDRLVLTMHPKFKGGKGRNGAPARNENKVGEKTKVFKGLALPDKEPTWQDDEET
TNDHAINGTDAIDDTLALLEGLAPKAQTEKVVRTSRKRSRSPDQDCDRGRSRKDRHRSRS
RSREEPRRRRKHEYEEEDGFGRMRKSHKSSRRKKEDDDYYKRPLTPEIDDEVNLYKIYDG
HVTGVKDFGAFVNIHGVKGKVDGLVHVSALVEGQRVNHPSDLVSRNQPVKVKVIKIEGNR
IGLSMKDVDQETGEDLSSQDRIQSGANSAPLGGKNEYGLIDEPVPVFEGEMSRNSRKNKK
RMTSPERWEIRQLIASGVVKASDYPDLDEDYNATLNGEGEMELEEDVDIEIREEEPPFLT
GQTKQSLELSPIRVVKAPDGSLNRAAMAGTTLAKDRRELKQQEAQDKATEDGAKVDLSAQ
WNDPMVNPDQRQFASDLRAVKQQPPTDVVPAWKKATQSKNEPLGRRTDMSIKDQRESLPV
FRFRSELIKAVHENQLLIVVGDTGSGKTTQLTQYLAEAGFANDGIIGCTQPRRVAAMSVA
KRVAEEVGCELGQEVGYTIRFEDCTSPATKIKYMTDGMLQREVLMDPDLKRYSVIMLDEA
HERTISTDVLFALLKKTIKRRPDLKIIVTSATLDADKFSSYFNECPIFSIPGRTFPVEVM
YSREPESDYLDAALVTVMQIHLTEPPGDILLFLTGSEEIDTSCEILYERMKALGPSVPEL
IILPVYASLPTELQSKIFDPAPPGARKVVIATNIAETSITIDHIYYVIDPGFVKQNAYDP
KLGMDSLIVTPISQAQAKQRAGRAGRTGPGKCFRLYTEAAFQSEMLPTSIPEIQRQNLST
TILMLKAMGINDLLHFDFMDPPPTNTMLTALEELYALSALDDEGLLTRLGRKMADFPMEP
SLSKVLIAAVDLGCSDELLSIVAMISIPTIFYRPKEKQAQADQKKAKFHDPHGDHLTLLN
VYNSWKQNKFASTWCFENFIQARSMKRAKDVRDQLLKIMERYKHPIVSCGRNTDKVRQAL
CSGFFRNSARKDPQEGYKTLIEGTPVYLHPSSALFGKQAEWVIYHTLVMTTKEYMHCTTS
IDPKWLVSAAPSFFKVADAGKLSKRKKAERIQPLYNKFAAEDDWRLSAQKRQGRGGGGGT
WG
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atggacgaccttgagtccctcgaaattctttctttggtgcagagagtagcttctgaatta
cagaaccatcttggaatcagtgataaaaccctcgccgagtttgttattgcgcaacatgca
gaatgcagttctctcgaagaatttcagaagaagctcgaggcgatgggcgcagactttccc
caaagtttaatcgaaagcgtggatcgcctggtattaacgatgcacccgaagttcaaaggt
ggcaaaggtagaaatggtgcgccagctagaaatgagaataaagtcggagagaaaacgaaa
gtctttaaaggtttagcattacctgacaaggaaccgacatggcaggacgatgaagaaact
acaaatgatcacgcgataaatggaactgatgcgattgatgatacccttgcattgttagaa
ggtttagcaccaaaggcgcaaacggagaaagttgtgagaacaagcagaaaacgaagtagg
agcccagaccaagattgtgatagaggacgaagtcgcaaagataggcaccgatctagatca
aggtccagagaagagccaaggaggcggcggaagcacgagtacgaggaagaggatggattt
gggagaatgaggaagagtcacaaaagtagcaggaggaaaaaagaagacgacgattattac
aaacgacccctcactcctgaaattgatgacgaggttaatttatataagatttatgacggt
catgtcactggtgtgaaggattttggagcttttgttaatatacacggtgtaaaaggaaag
gtcgatggacttgtgcatgtttctgcattagtggaagggcaacgggtaaatcatccatcg
gatctagtttcgcggaaccaacctgtaaaggtcaaagtcatcaaaatcgagggtaataga
attggactttcaatgaaggatgttgaccaggagactggagaggatttgtcttctcaagat
aggatacaatctggagctaatagtgctcctcttggtggtaaaaacgagtatggtttgatt
gatgagcctgtaccggttttcgaaggagaaatgtcgcggaattcgaggaagaacaaaaag
agaatgacatctcctgaaagatgggagattcgacaattgatcgcatccggcgtggtaaaa
gcatcggattatccggatcttgacgaggattataatgcgacattgaacggtgaaggggaa
atggagctcgaagaagatgttgatattgaaatacgagaagaagagcctcctttcttaact
ggacaaacgaagcagtcattagagttatcgcccatcagagtcgtgaaagctcccgatggc
tcgcttaatcgcgctgctatggcaggcacaactctagccaaagaccggagagagctgaaa
cagcaagaagctcaagacaaagctacggaagatggagcaaaggttgatctttcggcacaa
tggaatgaccctatggtaaacccggaccagagacagtttgccagtgatcttagagctgtc
aaacaacagccacctaccgacgttgtaccagcctggaagaaagcgactcagagtaagaat
gaacctctaggtcgccgcacggatatgtccatcaaagatcaaagagagtcacttccagtg
ttcaggttccggtctgagctgattaaggctgttcatgagaatcaacttttgatcgtagtt
ggtgacactggttcaggaaagacgacacaattgactcagtatttggcggaggcgggcttt
gctaacgatggtataattggttgtactcaacctcgtcgtgttgctgctatgtcagttgca
aagcgtgtggcggaagaagttgggtgcgagctcggtcaagaggttggatacactattcga
ttcgaagattgtactagtccagctacgaaaatcaagtacatgacagacggaatgttgcag
agagaggtattgatggaccctgatttaaaacgatattcggtcatcatgttggatgaggct
cacgaacgtaccatttctacagatgttctttttgcattactgaagaaaactatcaaacgt
cggccagatctgaagattattgtcacatctgctactctcgatgctgataaattttcgtcg
tattttaacgaatgtccaatcttctctattcctggtcgtacatttcctgtggaggtcatg
tactcaagagagccagaatctgattatcttgatgctgctctggttacggttatgcaaatt
catttgacagaacctccaggagatatccttctcttcttaacaggtagtgaggagattgac
acttcttgcgaaatcctctacgaacgtatgaaagcacttggcccaagtgttcccgagtta
atcattcttcctgtctatgcctcgttgcccacggaattgcaaagtaaaatcttcgaccct
gcacctcctggagctcgaaaggtggtgattgctaccaatatcgccgaaacttccattact
attgatcacatctattatgttattgatccaggattcgtcaaacaaaatgcttacgaccca
aagcttggtatggattcgttgatagttacgcccatttctcaagctcaggccaaacaacgt
gctggacgtgctggaagaacaggtcctggaaaatgtttccgtctttacactgaagccgct
tttcaatccgagatgttgcctactagtataccagaaattcagaggcagaatttatctacg
actattttgatgttgaaggctatgggcatcaatgatttattacattttgactttatggat
ccaccaccgacaaatactatgttgacagccttggaagagttatatgcactttcggcgttg
gatgatgaaggtcttctcactcgtttgggtcgtaagatggctgattttcctatggagcca
tctctctcgaaagttcttatcgcagcagttgatctcggctgctccgatgaacttcttagt
attgttgctatgatttctatcccaactatcttttatagaccaaaggaaaagcaagctcag
gccgatcaaaagaaagcgaaatttcatgatcctcacggtgatcatcttacccttttgaat
gtctacaatagttggaagcaaaacaaatttgcgagcacatggtgtttcgaaaatttcatt
caagcacggagcatgaagcgtgcaaaggatgtacgcgatcaactgttgaagatcatggag
cgatacaaacatcctattgtatcctgcggtcgtaacacagataaagtccgacaagcactt
tgctcaggattcttccgaaactctgctcgaaaggatcctcaggaaggatacaaaactcta
atagaaggcacacctgtgtacctacatccttcatccgctctcttcggcaaacaagccgaa
tgggtgatctatcatacccttgtcatgacgacaaaagaatacatgcattgcacaacaagt
attgatcctaagtggttggtgagtgcagcaccaagtttcttcaaggtggcggatgcaggg
aaattgtcaaagagaaagaaggcagagagaattcaacctctttataataaatttgctgca
gaggatgattggagattgagtgcgcaaaaaaggcaaggaaggggaggtggaggtggaact
tggggttga
DBGET
integrated database retrieval system
