Streptomyces solicathayae: R2D22_09760
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Entry
R2D22_09760 CDS
T11073
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ssli Streptomyces solicathayae
Pathway
ssli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R2D22_09760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssli03019
]
R2D22_09760
03400 DNA repair and recombination proteins [BR:
ssli03400
]
R2D22_09760
Enzymes [BR:
ssli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R2D22_09760
Messenger RNA biogenesis [BR:
ssli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R2D22_09760
DNA repair and recombination proteins [BR:
ssli03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
R2D22_09760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_30
Pribosyltran
Motif
Other DBs
NCBI-ProteinID:
WOX21671
LinkDB
All DBs
Position
2169971..2172154
Genome browser
AA seq
727 aa
AA seq
DB search
MTHADRLEDRASLRAAADTVLARLVGDASGTAQLREDQWRAIEALVADKRRALVVQRTGW
GKSAVYFVATSLLRERGSGPTVIVSPLLALMRNQVEAAARAGIRARTINSSNTEEWETVQ
AEVAAGDVDVLLVSPERLNNPDFRDQVLPALAAATGLLVVDEAHCISDWGHDFRPDYRRL
RTMLADLPAGVPVLATTATANARVTADVAEQLGTGAGTDALVLRGPLDRESLSLSVLRLP
DAAHRLAWLADHLDELPGSGIIYTLTVAAAEEVTAYLRQCGHTVSSYTGRTENADRQQAE
EDLLANRVKALVATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQVGRAGRGVEHAEVLLL
PGPEDEAIWKYFASVAFPPEEQVRRTLDVLARADRPLSLPALEPLVELRRTRLETMLKVL
DVDGAVHRVKGGWTSTGRPWVYDAERYAWVARQREAEQDAMRAYASATTCRMEFLRRQLD
DEEAAPCGRCDNCSGAGFEPKVSAGALDAAKGELGRPGVEVEPRRMWPTGLAAVGVDLKG
RIPAGEQAFGGRALGRLSDIGWGNRLRPMLAERAADGPVPDDVVQAVVRVLADWAKGPGG
WASGAPDAPPRPAGVVTVASRTRPQLVDSLGRRIAEIGRMPLLGSVGYAPEAEDLRLSRT
NSAQRVVGLHQALMIPPELAAQLASAGGPVLLVDDLSDSGWTLAVAARLLRRSGAEGVFP
LVLAVQG
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgacccacgcagaccgcctcgaagaccgcgcgtcgctccgcgccgccgccgacaccgta
ctcgcccgcctcgtcggggacgcctccggcacggcgcagctgcgcgaggaccagtggcgc
gcgatcgaggcgctggtcgccgacaagcgcagagctctcgtggtgcagcgcaccggctgg
ggcaagtcggcggtgtacttcgtcgcgacctcgctgctccgcgagcgcggcagcggcccg
accgtgatcgtctccccgctgctggcgctcatgcgaaaccaggtcgaggccgccgctcgg
gcggggatccgcgcgcgcacgatcaactcgtcgaacaccgaggagtgggagacggtccag
gcggaggtcgccgcgggcgacgtggacgtgctcctggtcagccccgagcggctcaacaac
ccggacttccgcgaccaggtgctgcccgcgctggccgccgccaccggcctgctcgtggtc
gacgaggcgcactgcatctcggactggggccacgacttccgccccgactaccggcggctg
cgcacgatgctcgccgacctgcccgccggcgtaccggtcctcgccacgacggcgacggcg
aacgcgcgggtgaccgcggacgtggccgagcagctcggcacgggcgcgggcacggacgcg
ctggtgctgcggggcccgctggaccgggagagcctcagcctgagtgtgctgcggctgccg
gacgccgcgcaccggctcgcctggctcgccgaccatctggacgagctgccgggctcggga
atcatctacacgctcacggtcgccgcggccgaggaggtcaccgcgtacctgcggcagtgc
ggccacacggtgtcctcgtacacgggccgcaccgagaacgcggaccggcagcaggcggag
gaggacctgctggcgaaccgggtcaaggcgctggtcgccacgtccgcgctgggcatgggg
ttcgacaagcccgacctcgggttcgtcgtgcacctgggctcgccgtcctctcccatcgcc
tactaccagcaggtgggccgcgcgggccgcggtgtggagcacgcggaggtgctgctgctg
cccgggcccgaggacgaggcgatctggaagtacttcgcgtcggtggcgttcccgcccgag
gagcaggtgcggcggaccctggacgtgctggcgcgggcggaccggccgctctcgctgccc
gccctggagccactggtcgagctgcgccggacacggctggagacgatgctcaaggtcctg
gacgtcgacggggcggtgcaccgggtgaagggcggctggacgagcaccggccggccctgg
gtgtacgacgcggagcggtacgcctgggtggcccggcagcgggaggccgagcaggacgcc
atgcgggcgtacgcgtcggcgacgacgtgccggatggagttcctgcggcgccagttggac
gacgaggaggccgcgccctgcggccgctgcgacaactgctcgggggccggcttcgaaccg
aaggtgtcggcgggggcgctcgacgcggcgaagggcgaactgggccggccgggcgtggag
gtggagccgcgccggatgtggccgacggggctcgcggcggtcggcgtcgacctgaagggt
cgtattccggccggggagcaggcgttcggcgggcgtgccctggggcggctttcggacatc
ggctggggaaaccggctccggccgatgctcgcggagcgggcggcggacggtccggtgccg
gacgacgtggtgcaggcggtggtgcgggtactggccgactgggcgaagggtcccgggggt
tgggcctcgggtgctccggacgcaccgccccggccggcgggtgtggtgacggtcgcctcg
cgcacgcgtccgcagctcgtggactcgctgggccggcggatcgcggagatcggtcggatg
ccgctgctcgggtcggtcggctacgcgccggaggccgaggacctgcggctctcccggacc
aacagcgcccagcgggtggtcggtctgcaccaggcgctcatgattccgccggagctggcg
gcgcaactggcctcggccggcgggccggtgctcctggtcgacgacctgtcggacagcggc
tggacgctggccgtggcggcccgactgctgcgccgctccggagccgagggggtgttcccg
ctggtcctcgccgttcaggggtga
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