Streptomyces solicathayae: R2D22_10130
Help
Entry
R2D22_10130 CDS
T11073
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ssli Streptomyces solicathayae
Pathway
ssli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R2D22_10130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssli03019
]
R2D22_10130
Messenger RNA biogenesis [BR:
ssli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
R2D22_10130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
WOX21739
UniProt:
A0ABZ0LQH5
LinkDB
All DBs
Position
complement(2264753..2266438)
Genome browser
AA seq
561 aa
AA seq
DB search
MSHPHPELGAPPKLPKNGLRVTPLGGLGEIGRNMTVFEFDGRILIVDCGVLFPEEEQPGV
DLILPDFTTLRDRLDDVEGIVLTHGHEDHIGGVPYLLRLKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVAEGQREQLGPFDCEFIAVNHSIPDALAVAIRTPAGTAVATGDFKMDQLP
LDGRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFVPPEKDISNVLRTVFANAQKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLRVPAGLVVDVKTLDDLPD
DEVVLVCTGSQGEPMAALSRMANRDHQIRIVPGDTVILASSLIPGNENAVYRVINGLSRW
GANVVHKGNAKVHVSGHASAGELLYFYNICRPKNLMPVHGEWRHLRANAELGALTGIPKD
HIVIAEDGVVVDLVDGKARIVGKVQAGYVYVDGLSVGDVTESSLKDRRILGEEGIISAFV
VVDSTTGKIVSGPNIHARGSGIDDSAFNAVVPKLEEVLNKSAQDGVMEPHQLQQLIRRTI
GKWVSDTYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgaactcggcgccccgccgaagcttcccaagaacggtctgcgc
gtcacgccgctcggcgggctcggcgagatcggccggaacatgacggtcttcgaattcgac
ggccgcatcctgatcgtcgactgcggcgtcctcttccccgaagaggagcagcccggcgtc
gacctgatcctgccggacttcaccaccctccgggaccgcctggacgacgtcgagggcatc
gtcctcacgcacggccacgaggaccacatcggcggcgtcccgtacctgctccggctcaag
ccggacatcccgctgatcggttccaagctgaccctggccctcatcgaggccaagctccag
gagcaccgcatccgcccctacaccctcgaggtggccgaggggcagcgcgagcagctcgga
ccgttcgactgcgagttcatcgcggtcaaccactccatcccggacgccctggcggtcgcc
atccgcacccccgcgggcacggccgtcgccaccggcgacttcaagatggaccagctcccg
ctggacggccgcctcacggacctgcacgcgttcgcgcggctgagcgaggaaggcatcgac
ctcctcctctcggactcgacgaacgccgaggtgccgggtttcgtcccgccggagaaggac
atctcgaacgtcctgcgcacggtcttcgcgaacgcccagaagcggatcatcgtggccagc
ttcgccagccacgtgcaccgcatccagcagatcctcgacgccgcccacgagtacggccgc
agggtcgccttcgtcggccggtcgatggtccgcaacatgggcatcgcccgtgacctgggc
tacctgcgggtccccgccggcctcgtcgtcgacgtcaagacgctcgacgacctgccggac
gacgaggtcgtgctcgtctgcacgggctcccagggcgagcccatggcggccctgtcccgc
atggccaaccgcgaccaccagatccggatcgtccccggtgacacggtgatcctggcgtcg
tccctgatcccgggcaacgagaacgcggtctaccgcgtgatcaacggcctgagccgctgg
ggcgccaacgtggtccacaagggcaacgccaaggtgcacgtctcgggccacgcctcggcc
ggcgagctgctgtacttctacaacatctgccgcccgaagaacctcatgccggtccacggc
gaatggcgccacctgcgtgccaacgccgagctcggcgcgctgacggggatccccaaggac
cacatcgtcattgccgaggacggcgtggtcgtcgacctggtcgacggcaaggcccgcatc
gtcggcaaggtccaggccggttacgtgtacgtcgacggcctctcggtcggcgacgtcacc
gagtcctccctgaaggaccgccgcatcctcggtgaggagggcatcatctcggccttcgtc
gtcgtcgactcgacgaccggcaagatcgtgagcggcccgaacatccacgcccgcggttcc
ggcatcgacgactcggcgttcaacgccgtggtcccgaagctcgaagaggtcctgaacaag
tcggcccaggacggcgtcatggagccccaccagctccagcagctgatccgccgcacgatc
ggcaagtgggtgtccgacacctaccgccggcgcccgatgatccttccggtcgtcgtcgag
gtctga
DBGET
integrated database retrieval system