Streptomyces solicathayae: R2D22_11920
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Entry
R2D22_11920 CDS
T11073
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ssli Streptomyces solicathayae
Pathway
ssli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R2D22_11920 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssli03021
]
R2D22_11920 (rho)
03019 Messenger RNA biogenesis [BR:
ssli03019
]
R2D22_11920 (rho)
Transcription machinery [BR:
ssli03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
R2D22_11920 (rho)
Messenger RNA biogenesis [BR:
ssli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
R2D22_11920 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
ResIII
AAA_22
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
WOX22060
UniProt:
A0ABZ0LRE4
LinkDB
All DBs
Position
complement(2664979..2666970)
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AA seq
663 aa
AA seq
DB search
MSDTTDLMGVTADSSVDNAAPAAGAATGTTARRRRSGTGLEGMVLAELQQVASGLGIRGT
ARMRKSQLIEVIKEAQAGGGQAPAKSADTAETKPKRRATSKARTGEDAAESAAPKAEKAA
QQQIDIPGQPKPAASAEAAGDEQPAGERRRRRATAPAGSPEGDVKAEVKAETRTDAQPEA
KAEAAVEGAEGRGRRDRGERGERGDRRDRQRDRRDRGKGDDQQGGGQGGQRQQRQGQQGG
QQSGPQDDFDDEGGRRGRRGRYRDRRGRRGRDEFAAGEPQVSDDDVLIPVAGILDILDNY
AFIRTSGYLPGPNDVYVSLAQVRKNGLRKGDHVTGAVRQPKEGERREKFNALVRLDSSNG
MAADSGRGRPEFNKLTPLYPQDRLRLETDPGVLTTRIIDLVSPIGKGQRGLIVAPPKTGK
TMIMQAIANAITHNNPECHLMVVLVDERPEEVTDMQRSVKGEVISSTFDRPAEDHTTVAE
LAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTALYPPKRFFGAA
RNIEDGGSLTILATALVDTGSRMDEVIFEEFKGTGNMELKLDRKLADKRIFPAVDVDASG
TRKEEILLGSEELAIVWKLRRVLHALDQQQAIELLLDKMKQTKSNAEFLLQIQKTTPSAG
NND
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgtgactgccgacagcagtgtcgacaacgccgcg
cccgccgcaggtgctgccactggcaccaccgcacggcgccgccgctccggcaccggcctc
gagggcatggtcctggccgagctgcagcaggtcgcgtccggcctcggcatcaggggcacc
gcgcggatgcgcaagagccagctgatcgaggtcatcaaggaggcgcaggccggaggcggc
caggcccccgcgaagtccgccgacaccgcggagaccaagccgaagcgccgcgccacctcc
aaggcccgtacgggcgaggacgccgccgagtcggccgcgcccaaggccgagaaggccgcg
cagcagcagatcgacatcccgggccagccgaagcccgccgcctccgccgaggccgccggt
gacgagcagcccgcgggtgagcgccgtcgccgccgcgccaccgccccggccggcagcccc
gagggcgacgtcaaggccgaggtcaaggccgagacccgtaccgacgcgcagccggaggcg
aaggccgaggccgccgtcgagggcgccgagggccgtggccgccgcgaccgcggggagcgg
ggcgagcgcggtgaccgccgcgaccgtcagcgcgaccgccgcgaccgtggcaagggcgac
gaccagcagggcggtggccagggtggccagcgccagcagcgtcagggccagcagggcggt
cagcagagcggaccgcaggacgacttcgacgacgagggcggccgccgtggccgtcgcggc
cgctaccgcgaccgtcgtggccgtcgtggccgtgacgagttcgccgccggcgagccgcag
gtctccgacgacgacgtcctgatccccgtcgcgggcatcctggacatcctcgacaactac
gcgttcatccggacctccggctacctgcccggcccgaacgacgtgtacgtctccctcgcc
caggtccgcaagaacggcctgcgcaagggtgaccacgtcaccggcgccgtgcgtcagccg
aaggagggcgagcgccgcgagaagttcaacgcgctggtccgcctggactcctcgaacggc
atggccgccgattccggccgtggccgcccggagttcaacaagctgaccccgctctacccg
caggaccgcctccgtctggagaccgacccgggtgtgctgaccacgcggatcatcgacctc
gtgtcgccgatcggcaagggccagcgaggcctgatcgtggccccgccgaagaccggcaag
accatgatcatgcaggcgatcgccaacgcgatcacccacaacaaccccgagtgccacctg
atggtcgtcctggtcgacgagcgtccggaagaggtcaccgacatgcagcggtcggtcaag
ggcgaggtcatctcctcgaccttcgaccgtccggccgaggaccacaccaccgtcgccgag
ctggccatcgagcgcgccaagcgcctcgtggagctgggtcacgacgtggtcgtcctgctc
gactcgatcacccgcctgggccgcgcgtacaacctcgcggcgcccgcctccggccgcatc
ctgtccggtggtgtcgactcgaccgcgctctacccgccgaagcgcttcttcggtgcggcg
cgcaacatcgaggacggcggctcgctgaccatcctggccaccgcgctggtcgacaccggc
tcgcgcatggacgaggtgatcttcgaggagttcaagggcaccggcaacatggagctcaag
ctcgaccggaagctcgccgacaagcgcatcttcccggccgtcgacgtcgacgcctcgggt
acgcgcaaggaggagatcctgctcggcagcgaggagctcgccatcgtctggaagctgcgc
cgggtgctgcacgcgctcgaccagcagcaggcgatcgagctgctgctcgacaagatgaag
cagacgaagtcgaacgccgagttcctgctgcagatccagaagacgaccccgtcggccggc
aacaacgactga
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