Streptomyces solicathayae: R2D22_22205
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Entry
R2D22_22205 CDS
T11073
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ssli Streptomyces solicathayae
Pathway
ssli03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R2D22_22205 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssli03400
]
R2D22_22205 (mfd)
Enzymes [BR:
ssli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R2D22_22205 (mfd)
DNA repair and recombination proteins [BR:
ssli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
R2D22_22205 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
MFD_D3
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WOX23953
LinkDB
All DBs
Position
4783965..4787495
Genome browser
AA seq
1176 aa
AA seq
DB search
MSLHGLLDAVVRDAALAEAVKAATDGNRMHVDLVGPPAARPFAVAALAREARRPVLAVTA
TGREAEDLAAALRSLLDPDTVVDYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPSLDDP
AAGPVSVVVAPVRSVLQPQVKGLGDLEPVSLRTGRQADLNEVVEGLAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDDIEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDQVKERAAALAEEHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGSMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWGIADVRDRARELDMM
WWSVSPFAADEELDADTLKLGMHAPETYRGDTARALADTKGWLADGWRTVYVTEAPGPAA
RTVEVLGGEGIAARLDANLADISPAVVHVSTGSIDYGFVDPALKLAVLTETDLSGQKAAG
KDGQRMPAKRRKTIDPLTLEVGDYIVHEQHGVGRYIEMVQRTVQGATREYLLVEYAPAKR
GQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGADTPWQRELEDAFPYVETPDQLSTIAEVKEDMEKSIPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFTERYSQFPVATRALSRFQSETESKA
TLDGLKDGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLRDIVPEARIATAHGQMSESALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASLEGGA
EEEAPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEDDIKAVREELTDRYGKLP
EPVENLLLVAGLRMLARACGVGEIVLQGPNIRFAPVELRESQELRLKRLYPRTVIKAPTQ
QILVPRPTSGKIGGKPVVGRELLAWTGEFLTTILGS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtacgagacgcggccctcgccgaagcggtg
aaggccgccacggacggcaaccgcatgcatgtggacctggtcggcccgcccgccgcgcgc
cccttcgcggtggcggcgctggcccgcgaggcgcggcgtccggtgctcgcggtcaccgcc
accggccgggaggccgaggacctggcggcggcgctgcgcagcctcctcgacccggacacg
gtcgtcgactacccgtcctgggagaccctgccgcacgagcggctctcgccccgctccgac
accgtcggccggcgcctcgccgtgctgcgccggctcgcccacccctcgctcgacgacccg
gccgcgggcccggtgtccgtcgtcgtcgcccccgtccgctcggtgctccagccgcaggtc
aagggcctgggcgacctggagccggtcagcctgcgcaccggacggcaggccgacctgaac
gaggtcgtcgagggcctggcggccgccgcgtacgcgcgggtggagctggtcgagaagcgt
ggcgagttcgccgtccgcggcggcatcctggacgtcttcccgccgaccgaggagcacccg
ctccggatcgagttctggggcgacgacatcgaggagatccgttacttcaaggtcgccgac
cagcgctccctggaggtcgccgagcacggcctgtgggcgccgccgtgccgcgagctgctg
ctgaccgaccaggtgaaggagcgggccgcggccctggccgaggagcaccccgagctgggc
gagctgctcggcaagatcgccgaggggatcgccgtcgagggcatggagtccctcgccccg
gtcctcgtcgacgacatggagctgctgctcgacgtgctgccgaagggcagcatggccgtg
gtctgcgaccccgagcgggtccggacgcgggcggcggacctcgtagcgacgagccaggag
ttcctgcaggcgtcgtgggcggccaccgccggtggcggcgaggcgccgatcgacgtcggc
gcggcctcgctgtgggggatcgcggacgtccgggaccgggcccgcgagctggacatgatg
tggtggtcggtctccccgttcgcggcggacgaggagctggacgccgacacgctgaagctg
ggcatgcacgccccggagacgtaccgcggcgacaccgcccgggcgctcgccgacaccaag
ggctggctggccgacggctggcgcacggtgtacgtgacggaggcgcccggcccggccgcc
cgcacggtcgaggtgctcggcggcgagggcatcgccgcccgcctcgacgcgaacctcgcc
gacatctccccggcagtcgtccacgtctcgaccggctcgatcgactacggcttcgtcgac
ccggccctgaagctggccgtactgaccgagacggacctgtccggccagaaggcggccggc
aaggacgggcagcggatgcccgccaagcgccgcaagaccatcgacccgctgaccctggag
gtcggcgactacatcgtgcacgaacagcacggcgtcggccggtacatcgagatggtgcag
cgcacggtgcagggcgcgacccgcgagtacctgctcgtcgagtacgcgccggccaagcgc
ggccagcccggcgaccggctgtacatcccgaccgaccagctggagcaggtcaccaagtac
gtcggcggcgaggccccgaccctgcaccggctcggcggcgcggactggacgaagacgaag
gcccgggcgaagaaggcggtcaaggagatcgccgccgacctgatcaagctctactccgcg
cggatggcggcccccggccacgccttcggcgcggacacgccctggcagcgggagctggag
gacgccttcccctacgtggagacgccggaccagctgtccaccatcgccgaggtcaaggag
gacatggagaagagcatccccatggaccgcctgatctgcggcgacgtcggctacggcaag
acggagatcgcggtccgggcggcgttcaaggccgtgcaggacggcaagcaggtcgccgtg
ctcgtgccgacgacgctcctggtgcagcagcacttcggcaccttcaccgagcgctactcg
cagttccccgtcgccacccgggcactcagccgattccagtcggagaccgagtcgaaggcg
acgctcgacggactgaaggacggctcggtcgacatcgtcatcggcacccaccggctgttc
tcctccgagaccaagttcaaggacctcggtctggtcatcgtcgacgaggagcagcggttc
ggcgtcgagcacaaggagcagctgaagaagctccgcgccaacgtcgacgtcctcaccatg
tcggccacccccatcccccgtacgctcgagatggcggtgaccggcatccgcgagatgtcg
acgatcaccaccccgccggaggagcggcacccggtcctcacgttcgtcggcccgtacgag
gagaagcagatcggcgcggcgatccgccgcgaactgctgcgcgagggccaggtcttctac
atccacaaccgggtcgagtcgatcgaccgggccgcggcccggctgcgcgacatcgtcccc
gaggcgcggatcgcgaccgcgcacggccagatgtccgagtcggccctggagcaggtcgtg
gtcgacttctgggagaagaagttcgacgtgctggtctccacgacgatcgtcgagtccggc
atcgacatctccaacgccaacaccctcatcgtcgagcgcggcgacaacttcggcctcagc
cagctgcaccagctgcgcggccgggtgggccggggccgcgagcgcggctacgcgtacttc
ctgtacccgccggagaagccgctgaccgagaccgcgcacgagcggctcgcgacgatcgcc
cagcacaccgagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgcggc
gcgggcaacctgctcggcggcgagcagtccggtcacatcgcgggcgtcggcttcgacctg
tacgtgcggatggtcggcgaggcggttgcggactaccgggcctcgctggagggcggcgcg
gaggaggaggcgccgctcgaggtcaagatcgagctgccggtcgacgcgcacgttccgcac
gactacgcgccgggcgagcggctgcgcctccaggcgtaccgggcgatcgcctcggcgaac
tcggaggacgacatcaaggcggtccgcgaggagctcaccgaccgctacggcaagctgccg
gagccggtggagaacctgctgctcgtggccggcctgcggatgctggcgcgggcctgcggg
gtcggcgagatcgtgctgcagggcccgaacatccggttcgcgccggtggagttgcgcgag
tcgcaggagctgcggctgaagcggctgtacccgcggacggtcatcaaggccccgacgcag
cagatcctggtgccgcgcccgacgagcggcaagatcggcggcaagccggtcgtcggccgc
gagctgctggcgtggaccggggagttcctgaccacgatcctcggctcgtag
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