Sediminispirochaeta smaragdinae: Spirs_0089
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Entry
Spirs_0089 CDS
T01287
Name
(GenBank) apurinic endonuclease Apn1
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
ssm
Sediminispirochaeta smaragdinae
Pathway
ssm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ssm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Spirs_0089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssm03400
]
Spirs_0089
Enzymes [BR:
ssm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
Spirs_0089
DNA repair and recombination proteins [BR:
ssm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
Spirs_0089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
ADK79249
UniProt:
E1R8A5
LinkDB
All DBs
Position
complement(94079..94924)
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AA seq
281 aa
AA seq
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MKYIGAHVSAAGGVEKAPLHAAEIGAGAFALFTKNQRQWKTKPLEEHSIKAFSDHLSQVG
ISPDHVLPHDSYLINLGSPEEEKWQRAFDAFLDEVRRAEQLGLKLLNFHPGSHLKKISEE
ECIGRIAKAMNRAIAETDSLVLVIENTAGQGSNIGYSFEQLGRLVELTENKKRVGVCIDT
CHAFAAGYDMRSREAYGHTMAHFDEVVGYSYLRGMHLNDAKSEFGSRVDRHAPLGDGNIG
IEAFRFLMEDSRLDDIPLILETPEPDRWAQEIKTLYDFAGT
NT seq
846 nt
NT seq
+upstream
nt +downstream
nt
atgaagtatatcggagctcatgttagtgccgccggcggggttgagaaggccccgctacat
gcggcggagataggcgcaggggcttttgccctttttacaaaaaatcaacgccagtggaag
acaaagcccctggaagagcattctatcaaggccttctccgaccatttatcccaagtaggg
atcagccccgaccatgtgctgccccacgattcctacctcatcaacttgggttctccggaa
gaagaaaaatggcagcgtgccttcgatgcctttttggatgaagtaagacgggccgaacaa
ctcggcctcaagctacttaattttcacccgggaagccacctgaaaaagatatccgaagag
gagtgtataggacgaattgcaaaggcgatgaacagggccatagcagaaaccgatagcctg
gttctggttatagaaaataccgcaggccagggttcaaacataggctacagcttcgaacag
ctgggacggcttgtggagttgacggaaaacaagaagcgggtcggagtctgtatcgatacc
tgccacgcatttgccgctgggtatgacatgcgcagcagggaagcttatggccataccatg
gcacactttgacgaagtcgtcggctattcctacctgcggggtatgcacctgaacgatgcc
aaatccgagtttggaagtagagttgaccgtcatgcccccttgggggacggaaacatcggc
atcgaggcctttcgtttcctgatggaagattccaggctcgatgatatccccctgattctg
gagacaccggagcccgatcgctgggcccaagaaatcaagaccctttacgactttgcagga
acctga
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