Sediminispirochaeta smaragdinae: Spirs_0856
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Entry
Spirs_0856 CDS
T01287
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ssm
Sediminispirochaeta smaragdinae
Pathway
ssm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Spirs_0856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssm03019
]
Spirs_0856
03400 DNA repair and recombination proteins [BR:
ssm03400
]
Spirs_0856
Enzymes [BR:
ssm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Spirs_0856
Messenger RNA biogenesis [BR:
ssm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Spirs_0856
DNA repair and recombination proteins [BR:
ssm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Spirs_0856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
Helicase_Sgs1
ResIII
Motif
Other DBs
NCBI-ProteinID:
ADK79991
UniProt:
E1RCB1
LinkDB
All DBs
Position
894373..896178
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AA seq
601 aa
AA seq
DB search
MNEVRRILKSVFGYSSFKANQKEVINAILAGRDLFAAMPTGGGKSLCYQIPALLFDGLTV
VVSPLIALMKDQVDAALSLGIPAAFLNSSQSQEDATETYRRLYRGEIKLLYLSPERLAVD
GFTERLAAFNVSLFAVDEAHCLSEWGHDFRPDYLALAQLRTAFPTVPIAAFTATATVRVQ
EDIIRLLRLEDPFILRASFNRKELFYQVLPKTEVLSQIAQYIGAHPDQSGIVYRLSRKDT
DKTVDYLGKLGIRALPYHAGMDKDERARNQERFNNDDVQVIVATTAFGMGIDKNNIRYVI
HGDLPKSMEGYYQETGRAGRDGLESQCILFFGTADIARLNYFIRQIEDPAEQRRSRENLD
RMARFASVNVCRRKQILEYFNETFEGNCGSCDVCTGTTNEIDAGTDARKLLSAIYRTREG
FGAGHIIDIVRGADTEKIRKNGHAALKTYGVGRDKSKKWWMGIVTELIGQQMIFRDSDRF
NVLRITEEGRKLLFGNEPFFILDPGGKAESSAKAPSFEQTAAGGAPTPTNTQLLTRLKQL
RTRLAKEHHLPPYIIFSDKTLTQMAAALPETSSELLAISGVGEKKLAAYGSDFLAVIREH
M
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaagtcagaagaattcttaaatcggttttcggctactcctcctttaaagcgaac
cagaaggaggttatcaacgccatccttgcagggcgggatctttttgccgccatgcccacc
gggggcggaaagagcctctgctatcagattccggccctgctctttgacgggcttaccgtt
gttgtcagtcctctgatcgccctcatgaaggaccaggttgatgcggcccttagcctgggg
attcctgcggcctttttgaacagtagtcagagccaggaggatgccaccgaaacctaccgt
cgtctttaccgaggggagattaaactcctctatctttcccccgagcgtctggccgtcgat
ggttttaccgagcgcttggcagcctttaatgtttctctctttgccgtggatgaggcccac
tgcctttccgagtggggccacgactttagaccggactatctggcccttgcacagttgcgt
accgcctttcccacggttcctatcgccgcctttaccgccaccgcgacggttcgggtgcag
gaggatattatccggctccttcggcttgaagatccctttatcctacgggcatccttcaat
cgaaaagaactcttctatcaggttttacccaaaaccgaggttctctcccaaatcgcccag
tacataggagcacatccggaccagtcgggaatcgtctaccgcctgagccgaaaagatacc
gataaaaccgtcgactacctggggaaactgggtatccgtgccttgccctaccatgcagga
atggacaaggatgagcgggcgcggaaccaggaacgtttcaacaacgatgatgttcaggtc
attgtcgccaccacggccttcggcatgggaatcgacaagaacaacattcgctacgtgatc
catggtgacctacccaagagcatggagggctactatcaggaaaccggccgtgccgggcgg
gacggcttggaatcccaatgtatcctttttttcggtaccgccgacattgcccgtctgaat
tatttcattcggcagatcgaagatcctgccgagcagcgacgaagcagggagaacctggat
agaatggcccgctttgcctcggtcaatgtttgccggcgcaagcagattctagaatatttc
aacgaaaccttcgagggtaactgcggcagctgcgatgtctgtaccggaaccacaaacgag
attgatgccggtacagatgcgcgaaagctcctttccgccatctatcgcacccgtgaaggc
tttggagctggtcacattatcgatatcgtccgcggcgccgatacggagaagatccgcaag
aacggacacgccgccttgaaaacctacggcgtggggagagacaagagcaagaagtggtgg
atgggcattgtcaccgaactcatcggccagcagatgatcttccgtgacagcgatcgcttc
aacgtgctgaggattaccgaagaagggcgaaagcttcttttcggcaacgagccctttttc
atccttgatcccggaggcaaggcggagtcctctgcaaaagccccttcttttgaacagaca
gcagccggtggtgctcccaccccgacaaatacgcagctacttaccaggctgaagcagctg
cgtactcgtctggcaaaggagcaccaccttcccccttacatcatcttttccgataagacc
ctcacccagatggccgcagccctccccgagaccagcagcgaactgcttgccatctccggg
gtaggggagaaaaaacttgctgcctacggctcggatttcttagcggtgatccgggagcat
atgtga
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