Sediminispirochaeta smaragdinae: Spirs_0980
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Entry
Spirs_0980 CDS
T01287
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ssm
Sediminispirochaeta smaragdinae
Pathway
ssm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Spirs_0980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssm03021
]
Spirs_0980
03400 DNA repair and recombination proteins [BR:
ssm03400
]
Spirs_0980
Enzymes [BR:
ssm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Spirs_0980
Transcription machinery [BR:
ssm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Spirs_0980
DNA repair and recombination proteins [BR:
ssm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Spirs_0980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_CTD
RNA_pol_A_bac
RNA_pol_L
HHH_5
HHH_XRCC3_RpoA
VWA_3
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
ADK80114
UniProt:
E1RCN4
LinkDB
All DBs
Position
1023200..1024255
Genome browser
AA seq
351 aa
AA seq
DB search
MARKNLLKGFKKPRGITFEHSELQSNYGKFVAYPFERGFGTTVGNTLRRVLLSSIQGYAV
SAVKITCYNEEGTPHMVSSEFEMVPEVVEDTPEIIANLKQLQIKLPEEVEQKTLLIECKG
PGEITGADFEKDNDVEIINKDWKILTMMEKANFDLEVQIDLGRGYVPSEVNEKYIEEIGT
IPIDAVFSPIKRVTYGIENTRVGQRSDYDKLTMEIYTDGTIAPEDALAEAAKIAKDHFTI
FINFDEDAIDGDDDVDEEEERVRAVLDTPVEELELSVRSFNCLKSANIRTIGDLTRKTEE
EIAKTRNFGKKSLQEIKEKLKEWNLSLGMTDYSVLKTSTKLPMNKEEEDEA
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atggcgcggaagaatctgttaaagggattcaagaaacctcggggaatcacttttgaacat
agtgaactacagtccaactatggtaaattcgtggcctaccctttcgagcgggggttcggt
acgacggtcggtaatacgcttcggagagttttgctctcttcgattcagggttatgccgta
agtgccgttaagattacctgttataacgaagagggtactccgcacatggtctcgagtgaa
tttgaaatggttcccgaggtggttgaggatacaccggaaattattgcaaatcttaaacaa
ttgcaaattaagttgccggaagaggtcgagcagaaaacccttctcattgagtgtaagggg
ccgggagaaattacgggtgccgactttgaaaaagacaatgatgttgaaattatcaacaag
gattggaaaatcctcaccatgatggagaaggccaatttcgatctggaagtccagattgat
ctcggtcggggatatgttccctctgaagtaaacgagaagtatatcgaagagatcggcacg
attccgattgatgcggtcttcagtcctataaagcgtgttacctatgggatcgagaatacc
agggttggacagcggagcgattacgataagctgacgatggaaatctacaccgatggcacg
attgctcccgaggatgctttggctgaggctgcaaagattgccaaggatcactttactatt
ttcatcaattttgatgaggatgcgatcgatggtgatgatgatgttgatgaagaggaagaa
cgggtaagggccgtattggatactcctgttgaggagctggaattgtcggttcgttcgttc
aactgcctgaagagcgcaaatatccggaccatcggtgacctgacccggaagaccgaggaa
gagattgcaaagaccagaaacttcggtaaaaaaagccttcaggagataaaggaaaaactg
aaggagtggaaccttagtctcggaatgaccgattacagtgttttgaagacttcgacaaaa
ctcccgatgaacaaggaagaagaagatgaagcatag
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